VJ Carey
| Snapshot Date: 2019-04-08 17:01:18 -0400 (Mon, 08 Apr 2019) |
| URL: https://git.bioconductor.org/packages/TxRegInfra |
| Branch: master |
| Last Commit: 783cf8c |
| Last Changed Date: 2019-03-31 22:03:03 -0400 (Sun, 31 Mar 2019) |
| Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-04-09 12:39:08 -0400 (Tue, 09 Apr 2019).
| Package 1658/1703 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| TxRegInfra 1.3.6 VJ Carey
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ OK ] | OK | | ||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | | ||||||
| merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
| Package: TxRegInfra |
| Version: 1.3.6 |
| Command: C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:TxRegInfra.install-out.txt --library=C:\Users\biocbuild\bbs-3.9-bioc\R\library --no-vignettes --timings TxRegInfra_1.3.6.tar.gz |
| StartedAt: 2019-04-09 06:32:40 -0400 (Tue, 09 Apr 2019) |
| EndedAt: 2019-04-09 06:47:09 -0400 (Tue, 09 Apr 2019) |
| EllapsedTime: 868.8 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: TxRegInfra.Rcheck |
| Warnings: 0 |
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### Running command:
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### C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:TxRegInfra.install-out.txt --library=C:\Users\biocbuild\bbs-3.9-bioc\R\library --no-vignettes --timings TxRegInfra_1.3.6.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.9-bioc/meat/TxRegInfra.Rcheck'
* using R Under development (unstable) (2019-03-09 r76216)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'TxRegInfra/DESCRIPTION' ... OK
* this is package 'TxRegInfra' version '1.3.6'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'TxRegInfra' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
'library' or 'require' call to 'shiny' in package code.
Please use :: or requireNamespace() instead.
See section 'Suggested packages' in the 'Writing R Extensions' manual.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
dnmetaApp: no visible global function definition for 'fluidPage'
dnmetaApp: no visible global function definition for 'sidebarLayout'
dnmetaApp: no visible global function definition for 'sidebarPanel'
dnmetaApp: no visible global function definition for 'helpText'
dnmetaApp: no visible global function definition for 'radioButtons'
dnmetaApp: no visible global function definition for
'checkboxGroupInput'
dnmetaApp: no visible global function definition for 'uiOutput'
dnmetaApp: no visible global function definition for 'mainPanel'
dnmetaApp: no visible global function definition for 'dataTableOutput'
dnmetaApp : server: no visible global function definition for
'renderUI'
dnmetaApp : server: no visible global function definition for
'selectInput'
dnmetaApp : server: no visible global function definition for
'renderDataTable'
dnmetaApp: no visible global function definition for 'runApp'
Undefined global functions or variables:
checkboxGroupInput dataTableOutput fluidPage helpText mainPanel
radioButtons renderDataTable renderUI runApp selectInput
sidebarLayout sidebarPanel uiOutput
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... NOTE
Note: found 14 marked UTF-8 strings
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
txmodels 13.97 3.39 592.47
getFieldNames 0.11 0.03 31.33
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
txmodels 15.11 1.14 16.28
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 3 NOTEs
See
'C:/Users/biocbuild/bbs-3.9-bioc/meat/TxRegInfra.Rcheck/00check.log'
for details.
TxRegInfra.Rcheck/00install.out
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###
### Running command:
###
### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/TxRegInfra_1.3.6.tar.gz && rm -rf TxRegInfra.buildbin-libdir && mkdir TxRegInfra.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=TxRegInfra.buildbin-libdir TxRegInfra_1.3.6.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL TxRegInfra_1.3.6.zip && rm TxRegInfra_1.3.6.tar.gz TxRegInfra_1.3.6.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 355k 100 355k 0 0 5398k 0 --:--:-- --:--:-- --:--:-- 6030k
install for i386
* installing *source* package 'TxRegInfra' ...
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'TxRegInfra'
finding HTML links ... done
RaggedMongoExpt html
URL_txregInAWS html
URL_txregLocal html
basicColData html
basicFormatter html
dgf_meta html
dnmeta html
dnmetaApp html
getDocumentFields html
getFieldNames html
grConverter html
importBedToMongo html
listAllCollections html
makeAggregator html
makeColData html
makeGRConverterList html
oldbasicColData html
ragged41FP html
sbov html
txmodels html
txregCollections html
verifyHasMongoCmd html
verifyRunningMongodb html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'TxRegInfra' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'TxRegInfra' as TxRegInfra_1.3.6.zip
* DONE (TxRegInfra)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'TxRegInfra' successfully unpacked and MD5 sums checked
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TxRegInfra.Rcheck/examples_i386/TxRegInfra-Ex.timings
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TxRegInfra.Rcheck/examples_x64/TxRegInfra-Ex.timings
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