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INSTALL report for SeqArray on merida2

This page was generated on 2019-04-09 13:28:00 -0400 (Tue, 09 Apr 2019).

Package 1460/1703HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
SeqArray 1.23.9
Xiuwen Zheng
Snapshot Date: 2019-04-08 17:01:18 -0400 (Mon, 08 Apr 2019)
URL: https://git.bioconductor.org/packages/SeqArray
Branch: master
Last Commit: 257b6ac
Last Changed Date: 2019-03-22 17:26:06 -0400 (Fri, 22 Mar 2019)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
merida2 OS X 10.11.6 El Capitan / x86_64 [ OK ] OK  OK  OK 

Summary

Package: SeqArray
Version: 1.23.9
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL SeqArray
StartedAt: 2019-04-08 18:57:12 -0400 (Mon, 08 Apr 2019)
EndedAt: 2019-04-08 18:58:06 -0400 (Mon, 08 Apr 2019)
EllapsedTime: 53.5 seconds
RetCode: 0
Status:  OK 

Command output

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL SeqArray
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* installing to library ‘/Library/Frameworks/R.framework/Versions/3.6/Resources/library’
* installing *source* package ‘SeqArray’ ...
** libs
clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DUSING_R -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/gdsfmt/include" -I/usr/local/include   -fPIC  -Wall -g -O2  -c ConvGDS2VCF.cpp -o ConvGDS2VCF.o
clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DUSING_R -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/gdsfmt/include" -I/usr/local/include   -fPIC  -Wall -g -O2  -c ConvToGDS.cpp -o ConvToGDS.o
clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DUSING_R -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/gdsfmt/include" -I/usr/local/include   -fPIC  -Wall -g -O2  -c ConvVCF2GDS.cpp -o ConvVCF2GDS.o
clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DUSING_R -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/gdsfmt/include" -I/usr/local/include   -fPIC  -Wall -g -O2  -c FileMerge.cpp -o FileMerge.o
clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DUSING_R -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/gdsfmt/include" -I/usr/local/include   -fPIC  -Wall -g -O2  -c GetData.cpp -o GetData.o
clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DUSING_R -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/gdsfmt/include" -I/usr/local/include   -fPIC  -Wall -g -O2  -c Index.cpp -o Index.o
clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DUSING_R -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/gdsfmt/include" -I/usr/local/include   -fPIC  -Wall -g -O2  -c LinkSNPRelate.cpp -o LinkSNPRelate.o
clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DUSING_R -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/gdsfmt/include" -I/usr/local/include   -fPIC  -Wall -g -O2  -c Methods.cpp -o Methods.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DUSING_R -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/gdsfmt/include" -I/usr/local/include   -fPIC  -Wall -g -O2  -c R_SeqArray.c -o R_SeqArray.o
clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DUSING_R -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/gdsfmt/include" -I/usr/local/include   -fPIC  -Wall -g -O2  -c ReadBySample.cpp -o ReadBySample.o
clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DUSING_R -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/gdsfmt/include" -I/usr/local/include   -fPIC  -Wall -g -O2  -c ReadByVariant.cpp -o ReadByVariant.o
clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DUSING_R -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/gdsfmt/include" -I/usr/local/include   -fPIC  -Wall -g -O2  -c SeqArray.cpp -o SeqArray.o
clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DUSING_R -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/gdsfmt/include" -I/usr/local/include   -fPIC  -Wall -g -O2  -c pkg_test.cpp -o pkg_test.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DUSING_R -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/gdsfmt/include" -I/usr/local/include   -fPIC  -Wall -g -O2  -c samtools_ext.c -o samtools_ext.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DUSING_R -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/gdsfmt/include" -I/usr/local/include   -fPIC  -Wall -g -O2  -c vectorization.c -o vectorization.o
clang++ -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o SeqArray.so ConvGDS2VCF.o ConvToGDS.o ConvVCF2GDS.o FileMerge.o GetData.o Index.o LinkSNPRelate.o Methods.o R_SeqArray.o ReadBySample.o ReadByVariant.o SeqArray.o pkg_test.o samtools_ext.o vectorization.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Library/Frameworks/R.framework/Versions/3.6/Resources/library/SeqArray/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (SeqArray)