Back to Multiple platform build/check report for BioC 3.9
ABCDEFGHIJKLMNOPQR[S]TUVWXYZ

BUILD report for SEPA on celaya2

This page was generated on 2019-04-09 13:14:19 -0400 (Tue, 09 Apr 2019).

Package 1457/1703HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
SEPA 1.13.0
Zhicheng Ji
Snapshot Date: 2019-04-08 17:01:18 -0400 (Mon, 08 Apr 2019)
URL: https://git.bioconductor.org/packages/SEPA
Branch: master
Last Commit: 175e7f0
Last Changed Date: 2018-10-30 11:54:34 -0400 (Tue, 30 Oct 2018)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  ERROR  skipped 
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK  ERROR  OK 
celaya2 OS X 10.11.6 El Capitan / x86_64  OK [ ERROR ] skipped  skipped 
merida2 OS X 10.11.6 El Capitan / x86_64  OK  OK  ERROR  OK 

Summary

Package: SEPA
Version: 1.13.0
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data SEPA
StartedAt: 2019-04-08 21:22:07 -0400 (Mon, 08 Apr 2019)
EndedAt: 2019-04-08 21:25:56 -0400 (Mon, 08 Apr 2019)
EllapsedTime: 228.6 seconds
RetCode: 1
Status:  ERROR 
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data SEPA
###
##############################################################################
##############################################################################


* checking for file ‘SEPA/DESCRIPTION’ ... OK
* preparing ‘SEPA’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘SEPA.Rnw’ using knitr

Building most specific GOs .....
	( 2360 GO terms found. )

Build GO DAG topology ..........
	( 5693 GO terms and 12953 relations. )

Annotating nodes ...............
	( 467 genes annotated to the GO terms. )

			 -- Classic Algorithm -- 

		 the algorithm is scoring 222 nontrivial nodes
		 parameters: 
			 test statistic: fisher

Building most specific GOs .....
	( 2360 GO terms found. )

Build GO DAG topology ..........
	( 5693 GO terms and 12953 relations. )

Annotating nodes ...............
	( 467 genes annotated to the GO terms. )

			 -- Classic Algorithm -- 

		 the algorithm is scoring 3 nontrivial nodes
		 parameters: 
			 test statistic: fisher

Building most specific GOs .....
	( 2360 GO terms found. )

Build GO DAG topology ..........
	( 5693 GO terms and 12953 relations. )

Annotating nodes ...............
	( 467 genes annotated to the GO terms. )

			 -- Classic Algorithm -- 

		 the algorithm is scoring 1272 nontrivial nodes
		 parameters: 
			 test statistic: fisher

Building most specific GOs .....
	( 2360 GO terms found. )

Build GO DAG topology ..........
	( 5693 GO terms and 12953 relations. )

Annotating nodes ...............
	( 467 genes annotated to the GO terms. )

			 -- Classic Algorithm -- 

		 the algorithm is scoring 561 nontrivial nodes
		 parameters: 
			 test statistic: fisher

Building most specific GOs .....
	( 2360 GO terms found. )

Build GO DAG topology ..........
	( 5693 GO terms and 12953 relations. )

Annotating nodes ...............
	( 467 genes annotated to the GO terms. )

			 -- Classic Algorithm -- 

		 the algorithm is scoring 858 nontrivial nodes
		 parameters: 
			 test statistic: fisher

Building most specific GOs .....
	( 2360 GO terms found. )

Build GO DAG topology ..........
	( 5693 GO terms and 12953 relations. )

Annotating nodes ...............
	( 467 genes annotated to the GO terms. )

			 -- Classic Algorithm -- 

		 the algorithm is scoring 1083 nontrivial nodes
		 parameters: 
			 test statistic: fisher
Error: processing vignette 'SEPA.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'SEPA.tex' failed.
LaTeX errors:
! Dimension too large.
\fb@put@frame ...p \ifdim \dimen@ >\ht \@tempboxa 
                                                  \fb@putboxa #1\fb@afterfra...
l.1949 ...contrasts argument ignored}}\end{kframe}
                                                  
! Dimension too large.
\fb@put@frame ...p \ifdim \dimen@ >\ht \@tempboxa 
                                                  \fb@putboxa #1\fb@afterfra...
l.1949 ...contrasts argument ignored}}\end{kframe}
                                                  
! Dimension too large.
\fb@put@frame ...p \ifdim \dimen@ >\ht \@tempboxa 
                                                  \fb@putboxa #1\fb@afterfra...
l.1949 ...contrasts argument ignored}}\end{kframe}
                                                  
! Dimension too large.
\fb@put@frame ...p \ifdim \dimen@ >\ht \@tempboxa 
                                                  \fb@putboxa #1\fb@afterfra...
l.1949 ...contrasts argument ignored}}\end{kframe}
                                                  
! Dimension too large.
\fb@put@frame ...p \ifdim \dimen@ >\ht \@tempboxa 
                                                  \fb@putboxa #1\fb@afterfra...
l.1949 ...contrasts argument ignored}}\end{kframe}
                                                  
! Dimension too large.
\fb@put@frame ...p \ifdim \dimen@ >\ht \@tempboxa 
                                                  \fb@putboxa #1\fb@afterfra...
l.1949 ...contrasts argument ignored}}\end{kframe}
                                                  
! Dimension too large.
\fb@put@frame ...p \ifdim \dimen@ >\ht \@tempboxa 
                                                  \fb@putboxa #1\fb@afterfra...
l.1949 ...contrasts argument ignored}}\end{kframe}
                                                  
! Dimension too large.
\fb@put@frame ...p \ifdim \dimen@ >\ht \@tempboxa 
                                                  \fb@putboxa #1\fb@afterfra...
l.1949 ...contrasts argument ignored}}\end{kframe}
                                                  
! Dimension too large.
\fb@put@frame ...p \ifdim \dimen@ >\ht \@tempboxa 
                                                  \fb@putboxa #1\fb@afterfra...
l.1949 ...contrasts argument ignored}}\end{kframe}
                                                  
--- failed re-building ‘SEPA.Rnw’

SUMMARY: processing the following file failed:
  ‘SEPA.Rnw’

Error: Vignette re-building failed.
Execution halted