Multiple platform build/check report for BioC 3.9 - CHECK report for RedeR on celaya2

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:RedeR.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings RedeR_1.31.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.9-bioc/meat/RedeR.Rcheck’
* using R Under development (unstable) (2019-03-18 r76245)
* using platform: x86_64-apple-darwin15.6.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘RedeR/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘RedeR’ version ‘1.31.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘RedeR’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is  8.1Mb
  sub-directories of 1Mb or more:
    data   3.3Mb
    java   4.3Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/Users/biocbuild/bbs-3.9-bioc/meat/RedeR.Rcheck/00check.log’
for details.

Installation output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL RedeR
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/3.6/Resources/library’
* installing *source* package ‘RedeR’ ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (RedeR)

Tests output

Example timings

name	user	system	elapsed
RedPort-class	0.004	0.001	0.005
RedPort	0.001	0.000	0.001
RedeR.data	0.533	0.055	0.588
addEdgeBetweenContainers	0.025	0.004	0.029
addEdges	0.017	0.002	0.019
addGraph	0.010	0.002	0.012
addLegend	0.010	0.001	0.012
addNodes	0.010	0.001	0.011
addSeries	0.009	0.001	0.010
addSubgraph	0.010	0.001	0.010
addSubgraph.list	0.010	0.001	0.010
att	0.028	0.003	0.031
calld	0.000	0.000	0.001
cea	0.012	0.002	0.013
deSelectEdges	0.009	0.001	0.010
deSelectGraph	0.015	0.001	0.015
deSelectNodes	0.009	0.001	0.010
deleteEdges	0.014	0.001	0.014
deleteNodes	0.016	0.001	0.018
deleteSelectedEdges	0.017	0.002	0.019
deleteSelectedNodes	0.017	0.002	0.019
duplicateGraph	0.010	0.001	0.012
exitd	0.001	0.000	0.001
getContainerComponets	0.011	0.001	0.011
getEdgeIDs	0.012	0.001	0.013
getEdges	0.011	0.002	0.012
getGraph	0.013	0.002	0.015
getNodeIDs	0.014	0.001	0.016
getNodes	0.010	0.001	0.011
getSourceEdgeIDs	0.014	0.002	0.016
getTargetEdgeIDs	0.014	0.001	0.016
gtoy.rm	0.001	0.000	0.001
isDynamicsActive	0.001	0.000	0.001
mergeNodes	0.019	0.001	0.021
mergeOutEdges	0.013	0.001	0.014
nestNodes	0.017	0.001	0.018
nesthc	1.726	0.164	1.890
ping	0.001	0.000	0.002
relax	0.012	0.003	0.014
resetd	0.001	0.000	0.001
selectAllEdges	0.011	0.002	0.014
selectAllNodes	0.011	0.002	0.013
selectEdges	0.011	0.002	0.014
selectGraph	0.011	0.003	0.014
selectNodes	0.017	0.003	0.020
setArrowDirection	0.021	0.003	0.024
subg	0.067	0.013	0.080
updateContainerSize	0.019	0.003	0.021
updateGraph	0.017	0.003	0.020
version	0.001	0.000	0.002

CHECK report for RedeR on celaya2

Summary

Command output

Installation output

Tests output

Example timings