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INSTALL report for Rcpi on tokay2

This page was generated on 2019-04-09 12:17:58 -0400 (Tue, 09 Apr 2019).

Package 1305/1703HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
Rcpi 1.19.2
Nan Xiao
Snapshot Date: 2019-04-08 17:01:18 -0400 (Mon, 08 Apr 2019)
URL: https://git.bioconductor.org/packages/Rcpi
Branch: master
Last Commit: 536ee7e
Last Changed Date: 2019-02-24 21:37:30 -0400 (Sun, 24 Feb 2019)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
merida2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK 

Summary

Package: Rcpi
Version: 1.19.2
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/Rcpi_1.19.2.tar.gz && rm -rf Rcpi.buildbin-libdir && mkdir Rcpi.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=Rcpi.buildbin-libdir Rcpi_1.19.2.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL Rcpi_1.19.2.zip && rm Rcpi_1.19.2.tar.gz Rcpi_1.19.2.zip
StartedAt: 2019-04-08 19:13:28 -0400 (Mon, 08 Apr 2019)
EndedAt: 2019-04-08 19:16:15 -0400 (Mon, 08 Apr 2019)
EllapsedTime: 167.0 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/Rcpi_1.19.2.tar.gz && rm -rf Rcpi.buildbin-libdir && mkdir Rcpi.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=Rcpi.buildbin-libdir Rcpi_1.19.2.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL Rcpi_1.19.2.zip && rm Rcpi_1.19.2.tar.gz Rcpi_1.19.2.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
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  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 2560k  100 2560k    0     0  7618k      0 --:--:-- --:--:-- --:--:-- 7759k

install for i386

* installing *source* package 'Rcpi' ...
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'Rcpi'
    finding HTML links ... done
    AA2DACOR                                html  
    AA3DMoRSE                               html  
    AAACF                                   html  
    AABLOSUM100                             html  
    AABLOSUM45                              html  
    AABLOSUM50                              html  
    AABLOSUM62                              html  
    AABLOSUM80                              html  
    AABurden                                html  
    AACPSA                                  html  
    AAConn                                  html  
    AAConst                                 html  
    AADescAll                               html  
    AAEdgeAdj                               html  
    AAEigIdx                                html  
    AAFGC                                   html  
    AAGETAWAY                               html  
    AAGeom                                  html  
    AAInfo                                  html  
    AAMOE2D                                 html  
    AAMOE3D                                 html  
    AAMetaInfo                              html  
    AAMolProp                               html  
    AAPAM120                                html  
    AAPAM250                                html  
    AAPAM30                                 html  
    AAPAM40                                 html  
    AAPAM70                                 html  
    AARDF                                   html  
    AARandic                                html  
    AATopo                                  html  
    AATopoChg                               html  
    AAWHIM                                  html  
    AAWalk                                  html  
    AAindex                                 html  
    OptAA3d                                 html  
    Rcpi-package                            html  
    acc                                     html  
    calcDrugFPSim                           html  
    calcDrugMCSSim                          html  
    calcParProtGOSim                        html  
    calcParProtSeqSim                       html  
    calcTwoProtGOSim                        html  
    calcTwoProtSeqSim                       html  
    checkProt                               html  
    convMolFormat                           html  
    extractDrugAIO                          html  
    extractDrugALOGP                        html  
    extractDrugAminoAcidCount               html  
    extractDrugApol                         html  
    extractDrugAromaticAtomsCount           html  
    extractDrugAromaticBondsCount           html  
    extractDrugAtomCount                    html  
    extractDrugAutocorrelationCharge        html  
    extractDrugAutocorrelationMass          html  
    extractDrugAutocorrelationPolarizability
                                            html  
    extractDrugBCUT                         html  
    extractDrugBPol                         html  
    extractDrugBondCount                    html  
    extractDrugCPSA                         html  
    extractDrugCarbonTypes                  html  
    extractDrugChiChain                     html  
    extractDrugChiCluster                   html  
    extractDrugChiPath                      html  
    extractDrugChiPathCluster               html  
    extractDrugDescOB                       html  
    extractDrugECI                          html  
    extractDrugEstate                       html  
    extractDrugEstateComplete               html  
    extractDrugExtended                     html  
    extractDrugExtendedComplete             html  
    extractDrugFMF                          html  
    extractDrugFragmentComplexity           html  
    extractDrugGraph                        html  
    extractDrugGraphComplete                html  
    extractDrugGravitationalIndex           html  
    extractDrugHBondAcceptorCount           html  
    extractDrugHBondDonorCount              html  
    extractDrugHybridization                html  
    extractDrugHybridizationComplete        html  
    extractDrugHybridizationRatio           html  
    extractDrugIPMolecularLearning          html  
    extractDrugKR                           html  
    extractDrugKRComplete                   html  
    extractDrugKappaShapeIndices            html  
    extractDrugKierHallSmarts               html  
    extractDrugLargestChain                 html  
    extractDrugLargestPiSystem              html  
    extractDrugLengthOverBreadth            html  
    extractDrugLongestAliphaticChain        html  
    extractDrugMACCS                        html  
    extractDrugMACCSComplete                html  
    extractDrugMDE                          html  
    extractDrugMannholdLogP                 html  
    extractDrugMomentOfInertia              html  
    extractDrugOBFP2                        html  
    extractDrugOBFP3                        html  
    extractDrugOBFP4                        html  
    extractDrugOBMACCS                      html  
    extractDrugPetitjeanNumber              html  
    extractDrugPetitjeanShapeIndex          html  
    extractDrugPubChem                      html  
    extractDrugPubChemComplete              html  
    extractDrugRotatableBondsCount          html  
    extractDrugRuleOfFive                   html  
    extractDrugShortestPath                 html  
    extractDrugShortestPathComplete         html  
    extractDrugStandard                     html  
    extractDrugStandardComplete             html  
    extractDrugTPSA                         html  
    extractDrugVABC                         html  
    extractDrugVAdjMa                       html  
    extractDrugWHIM                         html  
    extractDrugWeight                       html  
    extractDrugWeightedPath                 html  
    extractDrugWienerNumbers                html  
    extractDrugXLogP                        html  
    extractDrugZagrebIndex                  html  
    extractPCMBLOSUM                        html  
    extractPCMDescScales                    html  
    extractPCMFAScales                      html  
    extractPCMMDSScales                     html  
    extractPCMPropScales                    html  
    extractPCMScales                        html  
    extractProtAAC                          html  
    extractProtAPAAC                        html  
    extractProtCTDC                         html  
    extractProtCTDD                         html  
    extractProtCTDT                         html  
    extractProtCTriad                       html  
    extractProtDC                           html  
    extractProtGeary                        html  
    extractProtMoran                        html  
    extractProtMoreauBroto                  html  
    extractProtPAAC                         html  
    extractProtPSSM                         html  
    extractProtPSSMAcc                      html  
    extractProtPSSMFeature                  html  
    extractProtQSO                          html  
    extractProtSOCN                         html  
    extractProtTC                           html  
    getCPI                                  html  
    getDrug                                 html  
    getFASTAFromKEGG                        html  
    getFASTAFromUniProt                     html  
    getMolFromCAS                           html  
    getMolFromChEMBL                        html  
    getMolFromDrugBank                      html  
    getMolFromKEGG                          html  
    getMolFromPubChem                       html  
    getPDBFromRCSBPDB                       html  
    getPPI                                  html  
    getProt                                 html  
    getSeqFromKEGG                          html  
    getSeqFromRCSBPDB                       html  
    getSeqFromUniProt                       html  
    getSmiFromChEMBL                        html  
    getSmiFromDrugBank                      html  
    getSmiFromKEGG                          html  
    getSmiFromPubChem                       html  
    readFASTA                               html  
    readMolFromSDF                          html  
    readMolFromSmi                          html  
    readPDB                                 html  
    searchDrug                              html  
    segProt                                 html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'Rcpi' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'Rcpi' as Rcpi_1.19.2.zip
* DONE (Rcpi)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'Rcpi' successfully unpacked and MD5 sums checked