Multiple platform build/check report for BioC 3.9 - BUILD report for REMP on tokay2

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### Running command:
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###   chmod a+r REMP -R && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data REMP
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* checking for file 'REMP/DESCRIPTION' ... OK
* preparing 'REMP':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'REMP.Rnw' using Sweave
Loading required package: SummarizedExperiment
Loading required package: GenomicRanges
Loading required package: stats4
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall,
    clusterEvalQ, clusterExport, clusterMap,
    parApply, parCapply, parLapply, parLapplyLB,
    parRapply, parSapply, parSapplyLB

The following objects are masked from 'package:stats':

    IQR, mad, sd, var, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce,
    anyDuplicated, append, as.data.frame, basename,
    cbind, colMeans, colSums, colnames, dirname,
    do.call, duplicated, eval, evalq, get, grep,
    grepl, intersect, is.unsorted, lapply, mapply,
    match, mget, order, paste, pmax, pmax.int, pmin,
    pmin.int, rank, rbind, rowMeans, rowSums,
    rownames, sapply, setdiff, sort, table, tapply,
    union, unique, unsplit, which, which.max,
    which.min

Loading required package: S4Vectors

Attaching package: 'S4Vectors'

The following object is masked from 'package:base':

    expand.grid

Loading required package: IRanges

Attaching package: 'IRanges'

The following object is masked from 'package:grDevices':

    windows

Loading required package: GenomeInfoDb
Loading required package: Biobase
Welcome to Bioconductor

    Vignettes contain introductory material; view
    with 'browseVignettes()'. To cite Bioconductor,
    see 'citation("Biobase")', and for packages
    'citation("pkgname")'.

Loading required package: DelayedArray
Loading required package: matrixStats

Attaching package: 'matrixStats'

The following objects are masked from 'package:Biobase':

    anyMissing, rowMedians

Loading required package: BiocParallel

Attaching package: 'DelayedArray'

The following objects are masked from 'package:matrixStats':

    colMaxs, colMins, colRanges, rowMaxs, rowMins,
    rowRanges

The following objects are masked from 'package:base':

    aperm, apply, rowsum

Loading required package: minfi
Loading required package: Biostrings
Loading required package: XVector

Attaching package: 'Biostrings'

The following object is masked from 'package:DelayedArray':

    type

The following object is masked from 'package:base':

    strsplit

Loading required package: bumphunter
Loading required package: foreach
Loading required package: iterators
Loading required package: locfit
locfit 1.5-9.1 	 2013-03-22
Registered S3 method overwritten by 'openssl':
  method      from
  print.bytes Rcpp
Setting options('download.file.method.GEOquery'='auto')
Setting options('GEOquery.inmemory.gpl'=FALSE)
Loading required package: IlluminaHumanMethylation450kanno.ilmn12.hg19
Loading required package: IlluminaHumanMethylationEPICanno.ilm10b2.hg19

Attaching package: 'IlluminaHumanMethylationEPICanno.ilm10b2.hg19'

The following objects are masked from 'package:IlluminaHumanMethylation450kanno.ilmn12.hg19':

    Islands.UCSC, Locations, Manifest, Other,
    SNPs.132CommonSingle, SNPs.135CommonSingle,
    SNPs.137CommonSingle, SNPs.138CommonSingle,
    SNPs.141CommonSingle, SNPs.142CommonSingle,
    SNPs.144CommonSingle, SNPs.146CommonSingle,
    SNPs.147CommonSingle, SNPs.Illumina

Registered S3 methods overwritten by 'ggplot2':
  method         from 
  [.quosures     rlang
  c.quosures     rlang
  print.quosures rlang

Illumina 450k Methylation data in beta value detected.
    A total of 1715 zero beta values are found.
    Fixing zero beta values with the smallest beta value = 0.001 ...
    Converting beta value to M value ...
Methylation data grooming is completed.
Start Alu annotation data initialization ...  (0 sec.)
Illumina platform: 450k
Done.  (19 sec.)
REMParcel has been saved under the directory:
C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmp6Fvrge/REMP.data.450k
Using random seed = 777
Start RE methylation prediction with FALSE core(s) ...  (0 sec.)
Methylation data grooming is completed.
Preparing neighboring CpG information ...  (1 sec.)
Predicting sample GM12878 ...

Error: processing vignette 'REMP.Rnw' failed with diagnostics:
 chunk 8 (label = rempredict) 
Error in ranger::ranger(Methy ˜ ., data = d, mtry = param, num.threads = ncore,  : 
  Error: Invalid value for num.threads

--- failed re-building 'REMP.Rnw'

SUMMARY: processing the following file failed:
  'REMP.Rnw'

Error: Vignette re-building failed.
Execution halted
BUILD report for REMP on tokay2

Summary

Command output
