Alexander Pico
| Snapshot Date: 2019-04-08 17:01:18 -0400 (Mon, 08 Apr 2019) |
| URL: https://git.bioconductor.org/packages/RCy3 |
| Branch: master |
| Last Commit: 0d8c8b0 |
| Last Changed Date: 2019-03-30 14:56:28 -0400 (Sat, 30 Mar 2019) |
| Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-04-09 12:25:12 -0400 (Tue, 09 Apr 2019).
| Package 1308/1703 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| RCy3 2.3.12 Alexander Pico
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ OK ] | OK | | ||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | | ||||||
| merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
| Package: RCy3 |
| Version: 2.3.12 |
| Command: C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:RCy3.install-out.txt --library=C:\Users\biocbuild\bbs-3.9-bioc\R\library --no-vignettes --timings RCy3_2.3.12.tar.gz |
| StartedAt: 2019-04-09 05:17:18 -0400 (Tue, 09 Apr 2019) |
| EndedAt: 2019-04-09 05:18:47 -0400 (Tue, 09 Apr 2019) |
| EllapsedTime: 88.6 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: RCy3.Rcheck |
| Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:RCy3.install-out.txt --library=C:\Users\biocbuild\bbs-3.9-bioc\R\library --no-vignettes --timings RCy3_2.3.12.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.9-bioc/meat/RCy3.Rcheck' * using R Under development (unstable) (2019-03-09 r76216) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'RCy3/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'RCy3' version '2.3.12' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... NOTE Found the following hidden files and directories: .travis.yml These were most likely included in error. See section 'Package structure' in the 'Writing R Extensions' manual. * checking for portable file names ... OK * checking whether package 'RCy3' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE createNetworkFromDataFrames: no visible binding for global variable 'SUID' Undefined global functions or variables: SUID * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in 'vignettes' ... OK * checking examples ... ** running examples for arch 'i386' ... OK ** running examples for arch 'x64' ... OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... ** running tests for arch 'i386' ... Running 'runTests.R' OK ** running tests for arch 'x64' ... Running 'runTests.R' OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 2 NOTEs See 'C:/Users/biocbuild/bbs-3.9-bioc/meat/RCy3.Rcheck/00check.log' for details.
RCy3.Rcheck/00install.out
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###
### Running command:
###
### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/RCy3_2.3.12.tar.gz && rm -rf RCy3.buildbin-libdir && mkdir RCy3.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=RCy3.buildbin-libdir RCy3_2.3.12.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL RCy3_2.3.12.zip && rm RCy3_2.3.12.tar.gz RCy3_2.3.12.zip
###
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% Total % Received % Xferd Average Speed Time Time Time Current
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install for i386
* installing *source* package 'RCy3' ...
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'RCy3'
finding HTML links ... done
AddToGroup html
CytoscapeConnection-defunct html
CytoscapeWindow-defunct html
RCy3 html
RemoveFromGroup html
addCyEdges html
addCyNodes html
applyFilter html
bundleEdges html
clearEdgePropertyBypass html
clearNetworkCenterBypass html
clearNetworkPropertyBypass html
clearNetworkZoomBypass html
clearNodeOpacityBypass html
clearNodePropertyBypass html
clearSelection html
cloneNetwork html
closeSession html
collapseGroup html
commandEcho html
commandOpenDialog html
commandPause html
commandQuit html
commandRunFile html
commandSleep html
commandsAPI html
commandsGET html
commandsHelp html
commandsPOST html
commandsRun html
copyCytoscapeNetwork-defunct html
copyVisualStyle html
createColumnFilter html
createCompositeFilter html
createDegreeFilter html
createGraphFromNetwork html
createGroup html
createIgraphFromNetwork html
createNetworkFromDataFrames html
createNetworkFromGraph html
createNetworkFromIgraph html
createSubnetwork html
createVisualStyle html
createWindow-defunct html
createWindowFromSelection-defunct html
cybrowserClose html
cybrowserDialog html
cybrowserHide html
cybrowserList html
cybrowserSend html
cybrowserShow html
cybrowserVersion html
cyrestAPI html
cyrestDELETE html
cyrestGET html
cyrestPOST html
cyrestPUT html
cytoscapeApiVersions html
cytoscapeFreeMemory html
cytoscapeMemoryStatus html
cytoscapeNumberOfCores html
cytoscapePing html
cytoscapeVersionInfo html
deleteAllNetworks html
deleteAllWindows-defunct html
deleteDuplicateEdges html
deleteEdgeAttribute-defunct html
deleteGroup html
deleteNetwork html
deleteNodeAttribute-defunct html
deleteSelectedEdges html
deleteSelectedNodes html
deleteSelfLoops html
deleteStyleMapping html
deleteTableColumn html
deleteVisualStyle html
deleteWindow-defunct html
diffusionAdvanced html
diffusionBasic html
disableApp html
dockPanel html
enableApp html
existing.CytoscapeWindow-defunct html
expandGroup html
exportFilters html
exportImage html
exportNetwork html
exportNetworkToNDEx html
exportVisualStyles html
fitContent html
fitSelectedContent-defunct html
floatPanel html
getAllEdgeAttributes-defunct html
getAllEdges html
getAllNodeAttributes-defunct html
getAllNodes html
getAppInformation html
getAppStatus html
getAppUpdates html
getArrowShapes html
getAvailableApps html
getBackgroundColorDefault html
getCenter-defunct html
getCollectionList html
getCollectionName html
getCollectionNetworks html
getCollectionSuid html
getCommandNames-defunct html
getCommandNamesWithinNamespace-defunct
html
getDirectlyModifiableVisualProperties-defunct
html
getDisabledApps html
getEdgeAttribute-defunct html
getEdgeAttributeNames-defunct html
getEdgeColor html
getEdgeCount html
getEdgeLineStyle html
getEdgeLineWidth html
getEdgeProperty html
getEdgeSelectionColorDefault html
getEdgeTargetArrowShape html
getFilterList html
getFirstNeighbors html
getGraphFromCyWindow-defunct html
getGroupInfo html
getInstalledApps html
getLayoutNameMapping html
getLayoutNames html
getLayoutPropertyNames html
getLayoutPropertyType html
getLayoutPropertyValue html
getLineStyles html
getNetworkCenter html
getNetworkCount html
getNetworkList html
getNetworkNDExId html
getNetworkName html
getNetworkProperty html
getNetworkSuid html
getNetworkViewSuid html
getNetworkViews html
getNetworkZoom html
getNodeAttribute-defunct html
getNodeAttributeNames-defunct html
getNodeColor html
getNodeCount html
getNodeHeight html
getNodeProperty html
getNodeSelectionColorDefault html
getNodeShapes html
getNodeSize html
getNodeWidth html
getSelectedEdgeCount html
getSelectedEdges html
getSelectedNodeCount html
getSelectedNodes html
getStyleDependencies html
getTableColumnNames html
getTableColumnTypes html
getTableColumns html
getTableValue html
getUninstalledApps html
getVisualPropertyDefault html
getVisualPropertyNames html
getVisualStyleNames html
getWindowCount-defunct html
getWindowID-defunct html
getWindowList-defunct html
getZoom-defunct html
hideAllPanels html
hideEdges html
hideNodes html
hidePanel html
hideSelectedEdges html
hideSelectedNodes html
importFilters html
importNetworkFromFile html
importNetworkFromNDEx html
importVisualStyles html
installApp html
invertEdgeSelection html
invertNodeSelection html
layoutCopycat html
layoutNetwork html
listGroups html
loadTableData html
lockNodeDimensions html
makeSimpleGraph html
makeSimpleIgraph html
mapTableColumn html
mapVisualProperty html
matchArrowColorToEdge html
openAppStore html
openSession html
ping-defunct html
pluginVersion-defunct html
redraw-defunct html
removeNodeCustomGraphics html
renameCytoscapeNetwork-defunct html
renameNetwork html
renameTableColumn html
saveImage-defunct html
saveNetwork-defunct html
saveSession html
selectAllEdges html
selectAllNodes html
selectEdges html
selectEdgesAdjacentToSelectedNodes html
selectEdgesConnectedBySelectedNodes-defunct
html
selectEdgesConnectingSelectedNodes html
selectFirstNeighbors html
selectFirstNeighborsOfSelectedNodes-defunct
html
selectNodes html
selectNodesConnectedBySelectedEdges html
setBackgroundColorDefault html
setCenter-defunct html
setCurrentNetwork html
setCurrentView html
setEdgeColorBypass html
setEdgeColorDefault html
setEdgeColorMapping html
setEdgeFontFaceBypass html
setEdgeFontSizeBypass html
setEdgeFontSizeDefault html
setEdgeLabelBypass html
setEdgeLabelColorBypass html
setEdgeLabelMapping html
setEdgeLabelOpacityBypass html
setEdgeLineStyleBypass html
setEdgeLineStyleDefault html
setEdgeLineStyleMapping html
setEdgeLineWidthBypass html
setEdgeLineWidthDefault html
setEdgeLineWidthMapping html
setEdgeOpacityBypass html
setEdgeOpacityMapping html
setEdgePropertyBypass html
setEdgeSelectionColorDefault html
setEdgeSourceArrowColorBypass html
setEdgeSourceArrowColorDefault html
setEdgeSourceArrowColorMapping html
setEdgeSourceArrowMapping html
setEdgeSourceArrowShapeBypass html
setEdgeSourceArrowShapeDefault html
setEdgeTargetArrowColorBypass html
setEdgeTargetArrowColorDefault html
setEdgeTargetArrowColorMapping html
setEdgeTargetArrowMapping html
setEdgeTargetArrowShapeBypass html
setEdgeTargetArrowShapeDefault html
setEdgeTooltipBypass html
setEdgeTooltipMapping html
setLayoutProperties html
setNetworkCenterBypass html
setNetworkPropertyBypass html
setNetworkZoomBypass html
setNodeBorderColorBypass html
setNodeBorderColorDefault html
setNodeBorderColorMapping html
setNodeBorderOpacityBypass html
setNodeBorderWidthBypass html
setNodeBorderWidthDefault html
setNodeBorderWidthMapping html
setNodeColorBypass html
setNodeColorDefault html
setNodeColorMapping html
setNodeComboOpacityMapping html
setNodeCustomBarChart html
setNodeCustomBoxChart html
setNodeCustomHeatMapChart html
setNodeCustomLineChart html
setNodeCustomLinearGradient html
setNodeCustomPieChart html
setNodeCustomPosition html
setNodeCustomRadialGradient html
setNodeCustomRingChart html
setNodeFillOpacityBypass html
setNodeFontSizeBypass html
setNodeFontSizeDefault html
setNodeHeightBypass html
setNodeLabelBypass html
setNodeLabelColorBypass html
setNodeLabelColorDefault html
setNodeLabelMapping html
setNodeLabelOpacityBypass html
setNodeOpacityBypass html
setNodePropertyBypass html
setNodeSelectionColorDefault html
setNodeShapeBypass html
setNodeShapeDefault html
setNodeShapeMapping html
setNodeSizeBypass html
setNodeSizeDefault html
setNodeSizeMapping html
setNodeTooltipMapping html
setNodeWidthBypass html
setStyleDependencies html
setVisualPropertyDefault html
setVisualStyle html
setZoom-defunct html
sfn-defunct html
showGraphicsDetails-defunct html
syncNodeCustomGraphicsSize html
toggleGraphicsDetails html
unhideAll html
unhideEdges html
unhideNodes html
uninstallApp html
updateApp html
updateNetworkInNDEx html
updateStyleDefaults html
updateStyleMapping html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'RCy3' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'RCy3' as RCy3_2.3.12.zip
* DONE (RCy3)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'RCy3' successfully unpacked and MD5 sums checked
|
RCy3.Rcheck/tests_i386/runTests.Rout
R Under development (unstable) (2019-03-09 r76216) -- "Unsuffered Consequences"
Copyright (C) 2019 The R Foundation for Statistical Computing
Platform: i386-w64-mingw32/i386 (32-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> # tests disabled as the Bioconductor build system no longer supports interactive sessions
> #require(RCy3) || stop("unable to load RCy3")
> #BiocGenerics:::testPackage('RCy3')
>
> proc.time()
user system elapsed
0.26 0.03 0.28
|
RCy3.Rcheck/tests_x64/runTests.Rout
R Under development (unstable) (2019-03-09 r76216) -- "Unsuffered Consequences"
Copyright (C) 2019 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> # tests disabled as the Bioconductor build system no longer supports interactive sessions
> #require(RCy3) || stop("unable to load RCy3")
> #BiocGenerics:::testPackage('RCy3')
>
> proc.time()
user system elapsed
0.26 0.01 0.26
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RCy3.Rcheck/examples_i386/RCy3-Ex.timings
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RCy3.Rcheck/examples_x64/RCy3-Ex.timings
|