Yuliya V Karpievitch
| Snapshot Date: 2019-04-08 17:01:18 -0400 (Mon, 08 Apr 2019) |
| URL: https://git.bioconductor.org/packages/ProteoMM |
| Branch: master |
| Last Commit: 0b1db43 |
| Last Changed Date: 2019-01-04 13:16:01 -0400 (Fri, 04 Jan 2019) |
| Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-04-09 12:42:40 -0400 (Tue, 09 Apr 2019).
| Package 1242/1703 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| ProteoMM 1.1.1 Yuliya V Karpievitch
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ OK ] | OK | | ||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | | ||||||
| merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
| Package: ProteoMM |
| Version: 1.1.1 |
| Command: C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:ProteoMM.install-out.txt --library=C:\Users\biocbuild\bbs-3.9-bioc\R\library --no-vignettes --timings ProteoMM_1.1.1.tar.gz |
| StartedAt: 2019-04-09 05:06:50 -0400 (Tue, 09 Apr 2019) |
| EndedAt: 2019-04-09 05:10:45 -0400 (Tue, 09 Apr 2019) |
| EllapsedTime: 235.2 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: ProteoMM.Rcheck |
| Warnings: 0 |
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### Running command:
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### C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:ProteoMM.install-out.txt --library=C:\Users\biocbuild\bbs-3.9-bioc\R\library --no-vignettes --timings ProteoMM_1.1.1.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.9-bioc/meat/ProteoMM.Rcheck'
* using R Under development (unstable) (2019-03-09 r76216)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'ProteoMM/DESCRIPTION' ... OK
* this is package 'ProteoMM' version '1.1.1'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'ProteoMM' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... NOTE
License components which are templates and need '+ file LICENSE':
MIT
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
prot_level_multi_part 22.80 0.01 23.61
prot_level_multiMat_PresAbs 10.45 0.02 10.47
subset_proteins 7.23 0.00 8.18
get_presAbs_prots 6.28 0.03 6.31
plot_volcano 5.81 0.01 5.83
peptideLevel_PresAbsDE 5.16 0.00 5.16
plot_volcano_wLab 4.80 0.00 6.05
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
prot_level_multi_part 26.93 0.02 26.95
subset_proteins 8.13 0.01 13.90
prot_level_multiMat_PresAbs 7.35 0.00 7.36
get_presAbs_prots 6.37 0.03 6.41
peptideLevel_PresAbsDE 6.10 0.00 6.09
MBimpute 5.81 0.02 5.83
plot_volcano_wLab 5.41 0.00 5.41
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
'C:/Users/biocbuild/bbs-3.9-bioc/meat/ProteoMM.Rcheck/00check.log'
for details.
ProteoMM.Rcheck/00install.out
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###
### Running command:
###
### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/ProteoMM_1.1.1.tar.gz && rm -rf ProteoMM.buildbin-libdir && mkdir ProteoMM.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ProteoMM.buildbin-libdir ProteoMM_1.1.1.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL ProteoMM_1.1.1.zip && rm ProteoMM_1.1.1.tar.gz ProteoMM_1.1.1.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 111k 100 111k 0 0 1691k 0 --:--:-- --:--:-- --:--:-- 1893k
install for i386
* installing *source* package 'ProteoMM' ...
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'ProteoMM'
finding HTML links ... done
MBimpute html
convert_log2 html
eig_norm1 html
eig_norm2 html
eigen_pi html
g.test html
get_presAbs_prots html
hs_peptides html
makeLMFormula html
make_intencities html
make_meta html
mm_peptides html
peptideLevel_DE html
peptideLevel_PresAbsDE html
plot_1prot html
plot_3_pep_trends_NOfile html
plot_volcano html
plot_volcano_wLab html
prot_level_multiMat_PresAbs html
prot_level_multi_part html
subset_proteins html
sva.id html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'ProteoMM' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'ProteoMM' as ProteoMM_1.1.1.zip
* DONE (ProteoMM)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'ProteoMM' successfully unpacked and MD5 sums checked
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ProteoMM.Rcheck/examples_i386/ProteoMM-Ex.timings
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ProteoMM.Rcheck/examples_x64/ProteoMM-Ex.timings
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