Giorgio Melloni
| Snapshot Date: 2019-04-08 17:01:18 -0400 (Mon, 08 Apr 2019) |
| URL: https://git.bioconductor.org/packages/PrecisionTrialDrawer |
| Branch: master |
| Last Commit: e235af8 |
| Last Changed Date: 2019-02-12 11:15:56 -0400 (Tue, 12 Feb 2019) |
| Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-04-09 12:43:13 -0400 (Tue, 09 Apr 2019).
| Package 1218/1703 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| PrecisionTrialDrawer 0.99.17 Giorgio Melloni
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ OK ] | OK | | ||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | | ||||||
| merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
| Package: PrecisionTrialDrawer |
| Version: 0.99.17 |
| Command: C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:PrecisionTrialDrawer.install-out.txt --library=C:\Users\biocbuild\bbs-3.9-bioc\R\library --no-vignettes --timings PrecisionTrialDrawer_0.99.17.tar.gz |
| StartedAt: 2019-04-09 05:02:52 -0400 (Tue, 09 Apr 2019) |
| EndedAt: 2019-04-09 05:08:01 -0400 (Tue, 09 Apr 2019) |
| EllapsedTime: 309.1 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: PrecisionTrialDrawer.Rcheck |
| Warnings: 0 |
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### Running command:
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### C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:PrecisionTrialDrawer.install-out.txt --library=C:\Users\biocbuild\bbs-3.9-bioc\R\library --no-vignettes --timings PrecisionTrialDrawer_0.99.17.tar.gz
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* using log directory 'C:/Users/biocbuild/bbs-3.9-bioc/meat/PrecisionTrialDrawer.Rcheck'
* using R Under development (unstable) (2019-03-09 r76216)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'PrecisionTrialDrawer/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'PrecisionTrialDrawer' version '0.99.17'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'PrecisionTrialDrawer' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
newCancerPanel 0.79 0.11 21.88
panelDesigner 0.80 0.05 23.98
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
newCancerPanel 1.16 0.03 20.19
panelDesigner 0.79 0.04 24.70
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
PrecisionTrialDrawer.Rcheck/00install.out
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###
### Running command:
###
### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/PrecisionTrialDrawer_0.99.17.tar.gz && rm -rf PrecisionTrialDrawer.buildbin-libdir && mkdir PrecisionTrialDrawer.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=PrecisionTrialDrawer.buildbin-libdir PrecisionTrialDrawer_0.99.17.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL PrecisionTrialDrawer_0.99.17.zip && rm PrecisionTrialDrawer_0.99.17.tar.gz PrecisionTrialDrawer_0.99.17.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
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install for i386
* installing *source* package 'PrecisionTrialDrawer' ...
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Creating a generic function for 'toJSON' from package 'jsonlite' in package 'googleVis'
** help
*** installing help indices
converting help for package 'PrecisionTrialDrawer'
finding HTML links ... done
CancerPanel-class html
PrecisionTrialDrawer-package html
appendRepo html
coocMutexPlot html
coveragePlot html
coverageStackPlot html
cpArguments html
cpData html
cpDataSubset html
cpDesign html
cpFreq html
cpObj html
cpObj2 html
dataExtractor html
filterFusions html
filterMutations html
getAlterations html
newCancerPanel html
panelDesigner html
panelOptimizer html
panelexample html
propPowerSampleSize html
saturationPlot html
showCancerStudy html
showTumorType html
subsetAlterations html
survPowerSampleSize html
survPowerSampleSize1Arm html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Creating a generic function for 'toJSON' from package 'jsonlite' in package 'googleVis'
** testing if installed package can be loaded from final location
Creating a generic function for 'toJSON' from package 'jsonlite' in package 'googleVis'
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'PrecisionTrialDrawer' ...
** testing if installed package can be loaded
Creating a generic function for 'toJSON' from package 'jsonlite' in package 'googleVis'
* MD5 sums
packaged installation of 'PrecisionTrialDrawer' as PrecisionTrialDrawer_0.99.17.zip
* DONE (PrecisionTrialDrawer)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'PrecisionTrialDrawer' successfully unpacked and MD5 sums checked
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PrecisionTrialDrawer.Rcheck/examples_i386/PrecisionTrialDrawer-Ex.timings
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PrecisionTrialDrawer.Rcheck/examples_x64/PrecisionTrialDrawer-Ex.timings
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