Package: Organism.dplyr

Version: 1.11.2

Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/Organism.dplyr_1.11.2.tar.gz && rm -rf Organism.dplyr.buildbin-libdir && mkdir Organism.dplyr.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=Organism.dplyr.buildbin-libdir Organism.dplyr_1.11.2.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL Organism.dplyr_1.11.2.zip && rm Organism.dplyr_1.11.2.tar.gz Organism.dplyr_1.11.2.zip

StartedAt: 2019-04-08 20:21:31 -0400 (Mon, 08 Apr 2019)

EndedAt: 2019-04-08 20:22:40 -0400 (Mon, 08 Apr 2019)

EllapsedTime: 69.0 seconds

RetCode: 0

Status:  OK

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### Running command:
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###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/Organism.dplyr_1.11.2.tar.gz && rm -rf Organism.dplyr.buildbin-libdir && mkdir Organism.dplyr.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=Organism.dplyr.buildbin-libdir Organism.dplyr_1.11.2.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL Organism.dplyr_1.11.2.zip && rm Organism.dplyr_1.11.2.tar.gz Organism.dplyr_1.11.2.zip
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install for i386

* installing *source* package 'Organism.dplyr' ...
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'Organism.dplyr'
    finding HTML links ... done
    Genomic-Extractors                      html  
    finding level-2 HTML links ... done

    filter                                  html  
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmpm0Wlxj/R.INSTALL209c2e92242b/Organism.dplyr/man/filter.Rd:152: file link 'transcripts_tbl' in package 'Organism.dplyr' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmpm0Wlxj/R.INSTALL209c2e92242b/Organism.dplyr/man/filter.Rd:155: file link 'select,src_organism-method' in package 'Organism.dplyr' does not exist and so has been treated as a topic
    select                                  html  
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmpm0Wlxj/R.INSTALL209c2e92242b/Organism.dplyr/man/select.Rd:137: file link 'transcripts_tbl' in package 'Organism.dplyr' does not exist and so has been treated as a topic
    src                                     html  
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmpm0Wlxj/R.INSTALL209c2e92242b/Organism.dplyr/man/src.Rd:126: file link 'transcripts_tbl' in package 'Organism.dplyr' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmpm0Wlxj/R.INSTALL209c2e92242b/Organism.dplyr/man/src.Rd:129: file link 'select,src_organism-method' in package 'Organism.dplyr' does not exist and so has been treated as a topic
    utils                                   html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'Organism.dplyr' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'Organism.dplyr' as Organism.dplyr_1.11.2.zip
* DONE (Organism.dplyr)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'Organism.dplyr' successfully unpacked and MD5 sums checked