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INSTALL report for NuPoP on celaya2

This page was generated on 2019-04-09 12:59:21 -0400 (Tue, 09 Apr 2019).

Package 1096/1703HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
NuPoP 1.33.0
Ji-Ping Wang
Snapshot Date: 2019-04-08 17:01:18 -0400 (Mon, 08 Apr 2019)
URL: https://git.bioconductor.org/packages/NuPoP
Branch: master
Last Commit: 1f068cc
Last Changed Date: 2018-10-30 11:54:29 -0400 (Tue, 30 Oct 2018)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
celaya2 OS X 10.11.6 El Capitan / x86_64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
merida2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK 

Summary

Package: NuPoP
Version: 1.33.0
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL NuPoP
StartedAt: 2019-04-08 18:00:38 -0400 (Mon, 08 Apr 2019)
EndedAt: 2019-04-08 18:00:59 -0400 (Mon, 08 Apr 2019)
EllapsedTime: 20.8 seconds
RetCode: 0
Status:  OK 

Command output

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### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL NuPoP
###
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##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/3.6/Resources/library’
* installing *source* package ‘NuPoP’ ...
** using staged installation
** libs
gfortran  -fPIC  -Wall -g -O2  -c  vtbfb.f90 -o vtbfb.o
vtbfb.f90:13:32:

   character*80 seqName,out1,out2; character*2 tpc
                                1
Warning: Unused variable ‘out2’ declared at (1) [-Wunused-variable]
gfortran  -fPIC  -Wall -g -O2  -c  vtbfbNL4.f90 -o vtbfbNL4.o
vtbfbNL4.f90:257:106:

         if(d>=3) temp=temp*tranL2(w(t-d+1),w(t-d+2),w(t-d+3))*tranL2(c(z-t+1),c(z-t+2),c(z-t+3))/r(t-d+2)   
                                                                                                          1
Warning: Nonconforming tab character at (1) [-Wtabs]
vtbfbNL4.f90:272:13:

       end if 
             1
Warning: Nonconforming tab character at (1) [-Wtabs]
vtbfbNL4.f90:301:107:

         if(d>=3) temp=temp*tranL2(w(t-d+1),w(t-d+2),w(t-d+3))*tranL2(c(z-t+1),c(z-t+2),c(z-t+3))/ra(t-d+2)   
                                                                                                           1
Warning: Nonconforming tab character at (1) [-Wtabs]
vtbfbNL4.f90:314:23:

       tempL=tempL+temp 
                       1
Warning: Nonconforming tab character at (1) [-Wtabs]
vtbfbNL4.f90:335:87:

     if(z-t>=3) rb(t)=rb(t)*tranL2(w(t+1),w(t+2),w(t+3))*tranL2(c(1),c(2),c(3))/rb(t+2)   
                                                                                       1
Warning: Nonconforming tab character at (1) [-Wtabs]
vtbfbNL4.f90:364:105:

         if(d>=3) temp=temp*tranL2(w(t+1),w(t+2),w(t+3))*tranL2(c(z-t-d+1),c(z-t-d+2),c(z-t-d+3))/rb(t+2)   
                                                                                                         1
Warning: Nonconforming tab character at (1) [-Wtabs]
vtbfbNL4.f90:15:32:

   character*80 seqName,out1,out2; character*2 tpc
                                1
Warning: Unused variable ‘out2’ declared at (1) [-Wunused-variable]
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o NuPoP.so vtbfb.o vtbfbNL4.o -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin15/6.1.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Library/Frameworks/R.framework/Versions/3.6/Resources/library/00LOCK-NuPoP/00new/NuPoP/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (NuPoP)