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BUILD report for MoonlightR on celaya2

This page was generated on 2019-04-09 13:17:06 -0400 (Tue, 09 Apr 2019).

Package 1018/1703HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
MoonlightR 1.9.0
Antonio Colaprico
Snapshot Date: 2019-04-08 17:01:18 -0400 (Mon, 08 Apr 2019)
URL: https://git.bioconductor.org/packages/MoonlightR
Branch: master
Last Commit: 259f625
Last Changed Date: 2018-10-30 11:54:36 -0400 (Tue, 30 Oct 2018)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  ERROR  skipped 
tokay2 Windows Server 2012 R2 Standard / x64  OK  ERROR  skipped  skipped 
celaya2 OS X 10.11.6 El Capitan / x86_64  OK [ ERROR ] skipped  skipped 
merida2 OS X 10.11.6 El Capitan / x86_64  OK  ERROR  skipped  skipped 

Summary

Package: MoonlightR
Version: 1.9.0
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data MoonlightR
StartedAt: 2019-04-08 22:12:59 -0400 (Mon, 08 Apr 2019)
EndedAt: 2019-04-08 22:15:54 -0400 (Mon, 08 Apr 2019)
EllapsedTime: 175.8 seconds
RetCode: 1
Status:  ERROR 
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data MoonlightR
###
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* checking for file ‘MoonlightR/DESCRIPTION’ ... OK
* preparing ‘MoonlightR’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘Moonlight.Rmd’ using rmarkdown
Loading MoonlightR
Loading required package: doParallel
Loading required package: foreach
Loading required package: iterators
Loading required package: parallel
Warning in rgl.init(initValue, onlyNULL) :
  RGL: GLX extension missing on server
Warning: 'rgl_init' failed, running with rgl.useNULL = TRUE

Registered S3 methods overwritten by 'ggplot2':
  method         from 
  [.quosures     rlang
  c.quosures     rlang
  print.quosures rlang
Registered S3 method overwritten by 'enrichplot':
  method               from
  fortify.enrichResult DOSE
Registered S3 method overwritten by 'R.oo':
  method        from       
  throw.default R.methodsS3
Registered S3 method overwritten by 'rvest':
  method            from
  read_xml.response xml2
Setting options('download.file.method.GEOquery'='auto')
Setting options('GEOquery.inmemory.gpl'=FALSE)
Warning in has_utility("convert", "ImageMagick") :
  ImageMagick not installed or not in PATH
Quitting from lines 556-567 (Moonlight.Rmd) 
Error: processing vignette 'Moonlight.Rmd' failed with diagnostics:
cannot open the connection to 'https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=pubmed&id=&retmode=xml'
--- failed re-building ‘Moonlight.Rmd’

SUMMARY: processing the following file failed:
  ‘Moonlight.Rmd’

Error: Vignette re-building failed.
Execution halted