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INSTALL report for LymphoSeq on tokay2

This page was generated on 2019-04-09 12:26:31 -0400 (Tue, 09 Apr 2019).

Package 880/1703HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
LymphoSeq 1.11.0
David Coffey
Snapshot Date: 2019-04-08 17:01:18 -0400 (Mon, 08 Apr 2019)
URL: https://git.bioconductor.org/packages/LymphoSeq
Branch: master
Last Commit: 04ebe1e
Last Changed Date: 2018-10-30 11:54:36 -0400 (Tue, 30 Oct 2018)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
merida2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK 

Summary

Package: LymphoSeq
Version: 1.11.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/LymphoSeq_1.11.0.tar.gz && rm -rf LymphoSeq.buildbin-libdir && mkdir LymphoSeq.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=LymphoSeq.buildbin-libdir LymphoSeq_1.11.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL LymphoSeq_1.11.0.zip && rm LymphoSeq_1.11.0.tar.gz LymphoSeq_1.11.0.zip
StartedAt: 2019-04-08 19:26:51 -0400 (Mon, 08 Apr 2019)
EndedAt: 2019-04-08 19:28:03 -0400 (Mon, 08 Apr 2019)
EllapsedTime: 72.3 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/LymphoSeq_1.11.0.tar.gz && rm -rf LymphoSeq.buildbin-libdir && mkdir LymphoSeq.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=LymphoSeq.buildbin-libdir LymphoSeq_1.11.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL LymphoSeq_1.11.0.zip && rm LymphoSeq_1.11.0.tar.gz LymphoSeq_1.11.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
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  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100  710k  100  710k    0     0  9505k      0 --:--:-- --:--:-- --:--:-- 10.3M

install for i386

* installing *source* package 'LymphoSeq' ...
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'LymphoSeq'
    finding HTML links ... done
    alignSeq                                html  
    bhattacharyyaCoefficient                html  
    bhattacharyyaMatrix                     html  
    chordDiagramVDJ                         html  
    clonalRelatedness                       html  
    clonality                               html  
    cloneTrack                              html  
    commonSeqs                              html  
    commonSeqsBar                           html  
    commonSeqsPlot                          html  
    commonSeqsVenn                          html  
    differentialAbundance                   html  
    exportFasta                             html  
    geneFreq                                html  
    lorenzCurve                             html  
    mergeFiles                              html  
    pairwisePlot                            html  
    phyloTree                               html  
    productive                              html  
    productiveSeq                           html  
    readImmunoSeq                           html  
    removeSeq                               html  
    searchPublished                         html  
    searchSeq                               html  
    seqMatrix                               html  
    similarityMatrix                        html  
    similarityScore                         html  
    topFreq                                 html  
    topSeqs                                 html  
    topSeqsPlot                             html  
    uniqueSeqs                              html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'LymphoSeq' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'LymphoSeq' as LymphoSeq_1.11.0.zip
* DONE (LymphoSeq)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'LymphoSeq' successfully unpacked and MD5 sums checked