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BUILD BIN report for Linnorm on merida2

This page was generated on 2019-04-09 13:33:08 -0400 (Tue, 09 Apr 2019).

Package 860/1703HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
Linnorm 2.7.2
Ken Shun Hang Yip
Snapshot Date: 2019-04-08 17:01:18 -0400 (Mon, 08 Apr 2019)
URL: https://git.bioconductor.org/packages/Linnorm
Branch: master
Last Commit: 28babbf
Last Changed Date: 2019-01-04 13:36:51 -0400 (Fri, 04 Jan 2019)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
merida2 OS X 10.11.6 El Capitan / x86_64  OK  OK  WARNINGS [ OK ]

Summary

Package: Linnorm
Version: 2.7.2
Command: rm -rf Linnorm.buildbin-libdir && mkdir Linnorm.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh Linnorm_2.7.2.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R Linnorm.buildbin-libdir
StartedAt: 2019-04-09 05:43:05 -0400 (Tue, 09 Apr 2019)
EndedAt: 2019-04-09 05:44:26 -0400 (Tue, 09 Apr 2019)
EllapsedTime: 80.8 seconds
RetCode: 0
Status:  OK 
PackageFile: Linnorm_2.7.2.tgz
PackageFileSize: 4.23 MiB

Command output

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###
### Running command:
###
###   rm -rf Linnorm.buildbin-libdir && mkdir Linnorm.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh Linnorm_2.7.2.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R Linnorm.buildbin-libdir
###
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>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=Linnorm.buildbin-libdir Linnorm_2.7.2.tar.gz'
>>>>>>> 

* installing *source* package ‘Linnorm’ ...
** libs
clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/RcppArmadillo/include" -I/usr/local/include   -fPIC  -Wall -g -O2  -c Misc.cpp -o Misc.o
In file included from Misc.cpp:18:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/RcppArmadillo/include/RcppArmadillo.h:31:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:26:
In file included from /Library/Frameworks/R.framework/Versions/3.6/Resources/library/Rcpp/include/RcppCommon.h:128:
/Library/Frameworks/R.framework/Versions/3.6/Resources/library/Rcpp/include/Rcpp/exceptions.h:109:53: warning: all paths through this function will call itself [-Winfinite-recursion]
    inline void warning(const std::string& message) {        // #nocov start
                                                    ^
1 warning generated.
clang++ -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o Linnorm.so Misc.o -std=c++11 -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin15/6.1.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -DARMA_64BIT_WORD=1 -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.9-bioc/meat/Linnorm.buildbin-libdir/Linnorm/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (Linnorm)


>>>>>>> 
>>>>>>> FIXING LINKS FOR Linnorm.buildbin-libdir/Linnorm/libs//Linnorm.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libgcc_s.1.dylib" "Linnorm.buildbin-libdir/Linnorm/libs//Linnorm.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libgfortran.3.dylib" "Linnorm.buildbin-libdir/Linnorm/libs//Linnorm.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libreadline.5.2.dylib" "Linnorm.buildbin-libdir/Linnorm/libs//Linnorm.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libreadline.dylib" "Linnorm.buildbin-libdir/Linnorm/libs//Linnorm.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libquadmath.0.dylib" "Linnorm.buildbin-libdir/Linnorm/libs//Linnorm.so"
install_name_tool -change "/usr/local/gfortran/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libgfortran.3.dylib" "Linnorm.buildbin-libdir/Linnorm/libs//Linnorm.so"
install_name_tool -change "/usr/local/gfortran/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libquadmath.0.dylib" "Linnorm.buildbin-libdir/Linnorm/libs//Linnorm.so"