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BUILD report for KEGGgraph on malbec2

This page was generated on 2019-04-09 11:27:40 -0400 (Tue, 09 Apr 2019).

Package 840/1703HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
KEGGgraph 1.43.3
Jitao David Zhang
Snapshot Date: 2019-04-08 17:01:18 -0400 (Mon, 08 Apr 2019)
URL: https://git.bioconductor.org/packages/KEGGgraph
Branch: master
Last Commit: b40b1f9
Last Changed Date: 2019-02-11 09:53:00 -0400 (Mon, 11 Feb 2019)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK [ ERROR ] skipped 
tokay2 Windows Server 2012 R2 Standard / x64  OK  ERROR  skipped  skipped 
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  ERROR  skipped  skipped 
merida2 OS X 10.11.6 El Capitan / x86_64  OK  ERROR  skipped  skipped 

Summary

Package: KEGGgraph
Version: 1.43.3
Command: /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data KEGGgraph
StartedAt: 2019-04-08 19:18:58 -0400 (Mon, 08 Apr 2019)
EndedAt: 2019-04-08 19:19:17 -0400 (Mon, 08 Apr 2019)
EllapsedTime: 19.0 seconds
RetCode: 1
Status:  ERROR 
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data KEGGgraph
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* checking for file ‘KEGGgraph/DESCRIPTION’ ... OK
* preparing ‘KEGGgraph’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘KEGGgraph.Rnw’ using Sweave

Attaching package: ‘KEGGgraph’

The following object is masked from ‘package:graphics’:

    plot

Loading required package: graph
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: ‘BiocGenerics’

The following objects are masked from ‘package:parallel’:

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from ‘package:stats’:

    IQR, mad, sd, var, xtabs

The following objects are masked from ‘package:base’:

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, basename, cbind, colMeans, colSums, colnames,
    dirname, do.call, duplicated, eval, evalq, get, grep, grepl,
    intersect, is.unsorted, lapply, mapply, match, mget, order, paste,
    pmax, pmax.int, pmin, pmin.int, rank, rbind, rowMeans, rowSums,
    rownames, sapply, setdiff, sort, table, tapply, union, unique,
    unsplit, which, which.max, which.min

Loading required package: grid
Loading required package: org.Hs.eg.db
Loading required package: AnnotationDbi
Loading required package: stats4
Loading required package: Biobase
Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.

Loading required package: IRanges
Loading required package: S4Vectors

Attaching package: ‘S4Vectors’

The following objects are masked from ‘package:Rgraphviz’:

    from, to

The following object is masked from ‘package:base’:

    expand.grid



Error: processing vignette 'KEGGgraph.Rnw' failed with diagnostics:
 chunk 16 (label = bcc) 
Error in .Call("BGL_brandes_betweenness_centrality", as.integer(nv), as.integer(ne),  : 
  "BGL_brandes_betweenness_centrality" not available for .Call() for package "RBGL"

--- failed re-building ‘KEGGgraph.Rnw’

--- re-building ‘KEGGgraphApp.Rnw’ using Sweave
Loading required package: SPIA

--- finished re-building ‘KEGGgraphApp.Rnw’

SUMMARY: processing the following file failed:
  ‘KEGGgraph.Rnw’

Error: Vignette re-building failed.
Execution halted