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BUILD BIN report for GenoGAM on merida2

This page was generated on 2019-04-09 13:33:05 -0400 (Tue, 09 Apr 2019).

Package 639/1703HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
GenoGAM 2.1.9
Georg Stricker
Snapshot Date: 2019-04-08 17:01:18 -0400 (Mon, 08 Apr 2019)
URL: https://git.bioconductor.org/packages/GenoGAM
Branch: master
Last Commit: 800ebfa
Last Changed Date: 2019-04-07 18:32:20 -0400 (Sun, 07 Apr 2019)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  OK  WARNINGS YES, new version is higher than in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK  WARNINGS  OK YES, new version is higher than in internal repository
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  OK  WARNINGS  OK YES, new version is higher than in internal repository
merida2 OS X 10.11.6 El Capitan / x86_64  OK  OK  WARNINGS [ OK ]

Summary

Package: GenoGAM
Version: 2.1.9
Command: rm -rf GenoGAM.buildbin-libdir && mkdir GenoGAM.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh GenoGAM_2.1.9.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R GenoGAM.buildbin-libdir
StartedAt: 2019-04-09 05:26:13 -0400 (Tue, 09 Apr 2019)
EndedAt: 2019-04-09 05:27:27 -0400 (Tue, 09 Apr 2019)
EllapsedTime: 73.6 seconds
RetCode: 0
Status:  OK 
PackageFile: GenoGAM_2.1.9.tgz
PackageFileSize: 4.878 MiB

Command output

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### Running command:
###
###   rm -rf GenoGAM.buildbin-libdir && mkdir GenoGAM.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh GenoGAM_2.1.9.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R GenoGAM.buildbin-libdir
###
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>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=GenoGAM.buildbin-libdir GenoGAM_2.1.9.tar.gz'
>>>>>>> 

* installing *source* package ‘GenoGAM’ ...
** libs
clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -DARMA_64BIT_WORD=1 -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/RcppArmadillo/include" -I/usr/local/include   -fPIC  -Wall -g -O2  -c RcppExports.cpp -o RcppExports.o
clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -DARMA_64BIT_WORD=1 -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/RcppArmadillo/include" -I/usr/local/include   -fPIC  -Wall -g -O2  -c matrixMult.cpp -o matrixMult.o
clang++ -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o GenoGAM.so RcppExports.o matrixMult.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin15/6.1.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.9-bioc/meat/GenoGAM.buildbin-libdir/GenoGAM/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (GenoGAM)


>>>>>>> 
>>>>>>> FIXING LINKS FOR GenoGAM.buildbin-libdir/GenoGAM/libs//GenoGAM.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libgcc_s.1.dylib" "GenoGAM.buildbin-libdir/GenoGAM/libs//GenoGAM.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libgfortran.3.dylib" "GenoGAM.buildbin-libdir/GenoGAM/libs//GenoGAM.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libreadline.5.2.dylib" "GenoGAM.buildbin-libdir/GenoGAM/libs//GenoGAM.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libreadline.dylib" "GenoGAM.buildbin-libdir/GenoGAM/libs//GenoGAM.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libquadmath.0.dylib" "GenoGAM.buildbin-libdir/GenoGAM/libs//GenoGAM.so"
install_name_tool -change "/usr/local/gfortran/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libgfortran.3.dylib" "GenoGAM.buildbin-libdir/GenoGAM/libs//GenoGAM.so"
install_name_tool -change "/usr/local/gfortran/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libquadmath.0.dylib" "GenoGAM.buildbin-libdir/GenoGAM/libs//GenoGAM.so"