Back to Multiple platform build/check report for BioC 3.9
ABCDEF[G]HIJKLMNOPQRSTUVWXYZ

INSTALL report for GeneGeneInteR on tokay2

This page was generated on 2019-04-09 12:26:58 -0400 (Tue, 09 Apr 2019).

Package 621/1703HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
GeneGeneInteR 1.9.0
Mathieu Emily , Magalie Houee-Bigot
Snapshot Date: 2019-04-08 17:01:18 -0400 (Mon, 08 Apr 2019)
URL: https://git.bioconductor.org/packages/GeneGeneInteR
Branch: master
Last Commit: dd25738
Last Changed Date: 2018-10-30 11:54:36 -0400 (Tue, 30 Oct 2018)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
merida2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK 

Summary

Package: GeneGeneInteR
Version: 1.9.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/GeneGeneInteR_1.9.0.tar.gz && rm -rf GeneGeneInteR.buildbin-libdir && mkdir GeneGeneInteR.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GeneGeneInteR.buildbin-libdir GeneGeneInteR_1.9.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL GeneGeneInteR_1.9.0.zip && rm GeneGeneInteR_1.9.0.tar.gz GeneGeneInteR_1.9.0.zip
StartedAt: 2019-04-08 20:37:57 -0400 (Mon, 08 Apr 2019)
EndedAt: 2019-04-08 20:39:35 -0400 (Mon, 08 Apr 2019)
EllapsedTime: 98.2 seconds
RetCode: 0
Status:  OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/GeneGeneInteR_1.9.0.tar.gz && rm -rf GeneGeneInteR.buildbin-libdir && mkdir GeneGeneInteR.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GeneGeneInteR.buildbin-libdir GeneGeneInteR_1.9.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL GeneGeneInteR_1.9.0.zip && rm GeneGeneInteR_1.9.0.tar.gz GeneGeneInteR_1.9.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100  472k  100  472k    0     0  1709k      0 --:--:-- --:--:-- --:--:-- 1750k

install for i386

* installing *source* package 'GeneGeneInteR' ...
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'GeneGeneInteR'
    finding HTML links ... done
    CCA.test                                html  
    CLD.test                                html  
    GBIGM.test                              html  
    GGI                                     html  
    KCCA.test                               html  
    PCA.test                                html  
    PLSPM.test                              html  
    data.SNP                                html  
    gates.test                              html  
    gene.pair                               html  
    importFile                              html  
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpEfTLOX/R.INSTALL234020abe3a/GeneGeneInteR/man/importFile.Rd:42: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
    imputeSnpMatrix                         html  
    minP.test                               html  
    plot.GGInetwork                         html  
    print.GGItest                           html  
    selectSnps                              html  
    snpMatrixScour                          html  
    summary.GGInetwork                      html  
    summary.GGItest                         html  
    tProd.test                              html  
    tTS.test                                html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'GeneGeneInteR' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'GeneGeneInteR' as GeneGeneInteR_1.9.0.zip
* DONE (GeneGeneInteR)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'GeneGeneInteR' successfully unpacked and MD5 sums checked