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BUILD report for GSALightning on merida2

This page was generated on 2019-04-09 13:32:34 -0400 (Tue, 09 Apr 2019).

Package 711/1703HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
GSALightning 1.11.0
Billy Heung Wing Chang
Snapshot Date: 2019-04-08 17:01:18 -0400 (Mon, 08 Apr 2019)
URL: https://git.bioconductor.org/packages/GSALightning
Branch: master
Last Commit: babd661
Last Changed Date: 2018-10-30 11:54:35 -0400 (Tue, 30 Oct 2018)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
merida2 OS X 10.11.6 El Capitan / x86_64  OK [ OK ] OK  OK 

Summary

Package: GSALightning
Version: 1.11.0
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data GSALightning
StartedAt: 2019-04-08 21:24:45 -0400 (Mon, 08 Apr 2019)
EndedAt: 2019-04-08 21:26:49 -0400 (Mon, 08 Apr 2019)
EllapsedTime: 123.7 seconds
RetCode: 0
Status:  OK 
PackageFile: GSALightning_1.11.0.tar.gz
PackageFileSize: 18.25 MiB

Command output

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###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data GSALightning
###
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* checking for file ‘GSALightning/DESCRIPTION’ ... OK
* preparing ‘GSALightning’:
* checking DESCRIPTION meta-information ... OK
* installing the package to process help pages
* saving partial Rd database
* creating vignettes ... OK
* checking for LF line-endings in source and make files and shell scripts
* checking for empty or unneeded directories
* looking to see if a ‘data/datalist’ file should be added
  NB: this package now depends on R (>= 3.5.0)
  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'GSALightning/vignettes/vignette_cache/html/unnamed-chunk-10_37c8535e2aeaf4909ef1908bafc5cb9e.RData'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'GSALightning/vignettes/vignette_cache/html/unnamed-chunk-10_37c8535e2aeaf4909ef1908bafc5cb9e.rdx'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'GSALightning/vignettes/vignette_cache/html/unnamed-chunk-11_ac34ec359154381e4cd1388175fd4ae7.RData'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'GSALightning/vignettes/vignette_cache/html/unnamed-chunk-11_ac34ec359154381e4cd1388175fd4ae7.rdx'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'GSALightning/vignettes/vignette_cache/html/unnamed-chunk-12_fa31df64354e39250d81340af9bfcfb4.RData'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'GSALightning/vignettes/vignette_cache/html/unnamed-chunk-12_fa31df64354e39250d81340af9bfcfb4.rdx'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'GSALightning/vignettes/vignette_cache/html/unnamed-chunk-13_3a7c0c6298333a5d345cf11723026811.RData'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'GSALightning/vignettes/vignette_cache/html/unnamed-chunk-13_3a7c0c6298333a5d345cf11723026811.rdx'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'GSALightning/vignettes/vignette_cache/html/unnamed-chunk-14_ed821d4a679329effcc790be24a3e654.RData'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'GSALightning/vignettes/vignette_cache/html/unnamed-chunk-14_ed821d4a679329effcc790be24a3e654.rdx'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'GSALightning/vignettes/vignette_cache/html/unnamed-chunk-15_24020cae861e26f438e6dd90e1eee70f.RData'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'GSALightning/vignettes/vignette_cache/html/unnamed-chunk-15_24020cae861e26f438e6dd90e1eee70f.rdx'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'GSALightning/vignettes/vignette_cache/html/unnamed-chunk-16_95ffba8487142d86f244b1f75442e574.RData'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'GSALightning/vignettes/vignette_cache/html/unnamed-chunk-16_95ffba8487142d86f244b1f75442e574.rdx'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'GSALightning/vignettes/vignette_cache/html/unnamed-chunk-17_19b1b7584043d783045aabab8529a993.RData'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'GSALightning/vignettes/vignette_cache/html/unnamed-chunk-17_19b1b7584043d783045aabab8529a993.rdx'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'GSALightning/vignettes/vignette_cache/html/unnamed-chunk-18_9ed777d8adb00f2a17f3eb432e151ce4.RData'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'GSALightning/vignettes/vignette_cache/html/unnamed-chunk-18_9ed777d8adb00f2a17f3eb432e151ce4.rdx'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'GSALightning/vignettes/vignette_cache/html/unnamed-chunk-19_af9d481e952dfc8517ada3983c3683fa.RData'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'GSALightning/vignettes/vignette_cache/html/unnamed-chunk-19_af9d481e952dfc8517ada3983c3683fa.rdx'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'GSALightning/vignettes/vignette_cache/html/unnamed-chunk-1_57f2921a0e7bbc1d39855c2a238199a9.RData'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'GSALightning/vignettes/vignette_cache/html/unnamed-chunk-1_57f2921a0e7bbc1d39855c2a238199a9.rdx'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'GSALightning/vignettes/vignette_cache/html/unnamed-chunk-20_5c4f3288ef501e281977b678c7879c83.RData'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'GSALightning/vignettes/vignette_cache/html/unnamed-chunk-20_5c4f3288ef501e281977b678c7879c83.rdx'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'GSALightning/vignettes/vignette_cache/html/unnamed-chunk-21_1f81580839adc060e19d7accd1381071.RData'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'GSALightning/vignettes/vignette_cache/html/unnamed-chunk-21_1f81580839adc060e19d7accd1381071.rdx'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'GSALightning/vignettes/vignette_cache/html/unnamed-chunk-22_1aec6da1b7b34621d0e24b0ae6178a75.RData'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'GSALightning/vignettes/vignette_cache/html/unnamed-chunk-22_1aec6da1b7b34621d0e24b0ae6178a75.rdx'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'GSALightning/vignettes/vignette_cache/html/unnamed-chunk-23_ff9c622dbfef8c5d541b60422df32a84.RData'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'GSALightning/vignettes/vignette_cache/html/unnamed-chunk-23_ff9c622dbfef8c5d541b60422df32a84.rdx'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'GSALightning/vignettes/vignette_cache/html/unnamed-chunk-24_98f3e6a8e035e8c66736fba3130b9379.RData'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'GSALightning/vignettes/vignette_cache/html/unnamed-chunk-24_98f3e6a8e035e8c66736fba3130b9379.rdx'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'GSALightning/vignettes/vignette_cache/html/unnamed-chunk-25_0f98b36d4b76c078e54b4ff8fb14d26d.RData'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'GSALightning/vignettes/vignette_cache/html/unnamed-chunk-25_0f98b36d4b76c078e54b4ff8fb14d26d.rdx'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'GSALightning/vignettes/vignette_cache/html/unnamed-chunk-26_47b7017d3972ae3dbb4128b9844e3416.RData'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'GSALightning/vignettes/vignette_cache/html/unnamed-chunk-26_47b7017d3972ae3dbb4128b9844e3416.rdx'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'GSALightning/vignettes/vignette_cache/html/unnamed-chunk-2_a9b8f598829e888ae93b7edc62f613df.RData'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'GSALightning/vignettes/vignette_cache/html/unnamed-chunk-2_a9b8f598829e888ae93b7edc62f613df.rdx'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'GSALightning/vignettes/vignette_cache/html/unnamed-chunk-3_630c6cd0e95a08acb097f30704a4e678.RData'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'GSALightning/vignettes/vignette_cache/html/unnamed-chunk-3_630c6cd0e95a08acb097f30704a4e678.rdx'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'GSALightning/vignettes/vignette_cache/html/unnamed-chunk-4_7d1d34ba79bd8c3dec0a1c0714125303.RData'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'GSALightning/vignettes/vignette_cache/html/unnamed-chunk-4_7d1d34ba79bd8c3dec0a1c0714125303.rdx'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'GSALightning/vignettes/vignette_cache/html/unnamed-chunk-5_0de8f65dba09a54b533a8ba0f95a1076.RData'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'GSALightning/vignettes/vignette_cache/html/unnamed-chunk-5_0de8f65dba09a54b533a8ba0f95a1076.rdx'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'GSALightning/vignettes/vignette_cache/html/unnamed-chunk-6_6dd7bff55c7cb182c82181f53a63c514.RData'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'GSALightning/vignettes/vignette_cache/html/unnamed-chunk-6_6dd7bff55c7cb182c82181f53a63c514.rdx'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'GSALightning/vignettes/vignette_cache/html/unnamed-chunk-7_f3139e7fe3d6be302eaa492a020921a9.RData'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'GSALightning/vignettes/vignette_cache/html/unnamed-chunk-7_f3139e7fe3d6be302eaa492a020921a9.rdx'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'GSALightning/vignettes/vignette_cache/html/unnamed-chunk-8_b743afea17b61ae7cee1050442d96890.RData'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'GSALightning/vignettes/vignette_cache/html/unnamed-chunk-8_b743afea17b61ae7cee1050442d96890.rdx'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'GSALightning/vignettes/vignette_cache/html/unnamed-chunk-9_f317d03b7f19724bdbcb1f73db4a5499.RData'  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  'GSALightning/vignettes/vignette_cache/html/unnamed-chunk-9_f317d03b7f19724bdbcb1f73db4a5499.rdx'
* building 'GSALightning_1.11.0.tar.gz'