Back to Multiple platform build/check report for BioC 3.9
ABCDEF[G]HIJKLMNOPQRSTUVWXYZ

BUILD report for GAPGOM on malbec2

This page was generated on 2019-04-09 11:52:38 -0400 (Tue, 09 Apr 2019).

Package 594/1703HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
GAPGOM 0.99.36
Casper Peters
Snapshot Date: 2019-04-08 17:01:18 -0400 (Mon, 08 Apr 2019)
URL: https://git.bioconductor.org/packages/GAPGOM
Branch: master
Last Commit: 36592a8
Last Changed Date: 2019-04-04 08:08:32 -0400 (Thu, 04 Apr 2019)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK [ ERROR ] skipped 
tokay2 Windows Server 2012 R2 Standard / x64  OK  ERROR  skipped  skipped 
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  ERROR  skipped  skipped 
merida2 OS X 10.11.6 El Capitan / x86_64  OK  ERROR  skipped  skipped 

Summary

Package: GAPGOM
Version: 0.99.36
Command: /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data GAPGOM
StartedAt: 2019-04-08 22:25:46 -0400 (Mon, 08 Apr 2019)
EndedAt: 2019-04-08 22:26:45 -0400 (Mon, 08 Apr 2019)
EllapsedTime: 59.5 seconds
RetCode: 1
Status:  ERROR 
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data GAPGOM
###
##############################################################################
##############################################################################


* checking for file ‘GAPGOM/DESCRIPTION’ ... OK
* preparing ‘GAPGOM’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘GAPGOM.Rmd’ using rmarkdown
Quitting from lines 429-442 (GAPGOM.Rmd) 
Error: processing vignette 'GAPGOM.Rmd' failed with diagnostics:
When deleting columns, i should not be provided
--- failed re-building ‘GAPGOM.Rmd’

--- re-building ‘benchmarks.Rmd’ using rmarkdown
Registered S3 methods overwritten by 'ggplot2':
  method         from 
  [.quosures     rlang
  c.quosures     rlang
  print.quosures rlang
--- finished re-building ‘benchmarks.Rmd’

SUMMARY: processing the following file failed:
  ‘GAPGOM.Rmd’

Error: Vignette re-building failed.
Execution halted