Bruno Contrino
| Snapshot Date: 2019-04-08 17:01:18 -0400 (Mon, 08 Apr 2019) |
| URL: https://git.bioconductor.org/packages/Doscheda |
| Branch: master |
| Last Commit: 75ba196 |
| Last Changed Date: 2019-01-04 13:30:08 -0400 (Fri, 04 Jan 2019) |
| Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-04-09 12:32:15 -0400 (Tue, 09 Apr 2019).
| Package 451/1703 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| Doscheda 1.5.1 Bruno Contrino
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ OK ] | OK | | ||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | | ||||||
| merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
| Package: Doscheda |
| Version: 1.5.1 |
| Command: C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:Doscheda.install-out.txt --library=C:\Users\biocbuild\bbs-3.9-bioc\R\library --no-vignettes --timings Doscheda_1.5.1.tar.gz |
| StartedAt: 2019-04-09 02:23:36 -0400 (Tue, 09 Apr 2019) |
| EndedAt: 2019-04-09 02:29:13 -0400 (Tue, 09 Apr 2019) |
| EllapsedTime: 336.8 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: Doscheda.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:Doscheda.install-out.txt --library=C:\Users\biocbuild\bbs-3.9-bioc\R\library --no-vignettes --timings Doscheda_1.5.1.tar.gz
###
##############################################################################
##############################################################################
* using log directory 'C:/Users/biocbuild/bbs-3.9-bioc/meat/Doscheda.Rcheck'
* using R Under development (unstable) (2019-03-09 r76216)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'Doscheda/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'Doscheda' version '1.5.1'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'Doscheda' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
fitModel-methods 19.50 0.42 23.84
runDoscheda 16.09 0.03 18.08
pcaPlot-methods 5.15 0.01 9.36
densityPlot-methods 3.27 0.03 5.31
runNormalisation-methods 3.08 0.11 5.08
corrPlot-methods 2.75 0.08 5.33
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
fitModel-methods 20.01 0.43 24.89
runDoscheda 19.02 0.00 20.92
pcaPlot-methods 5.95 0.04 10.10
runNormalisation-methods 3.32 0.23 5.60
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
Running 'testthat.R'
OK
** running tests for arch 'x64' ...
Running 'testthat.R'
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
Doscheda.Rcheck/00install.out
##############################################################################
##############################################################################
###
### Running command:
###
### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/Doscheda_1.5.1.tar.gz && rm -rf Doscheda.buildbin-libdir && mkdir Doscheda.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=Doscheda.buildbin-libdir Doscheda_1.5.1.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL Doscheda_1.5.1.zip && rm Doscheda_1.5.1.tar.gz Doscheda_1.5.1.zip
###
##############################################################################
##############################################################################
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 2861k 100 2861k 0 0 12.4M 0 --:--:-- --:--:-- --:--:-- 12.8M
install for i386
* installing *source* package 'Doscheda' ...
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
in method for 'getInput' with signature '"ChemoProtSet"': no definition for class "ChemoProtSet"
in method for 'getNorm' with signature '"ChemoProtSet"': no definition for class "ChemoProtSet"
in method for 'getFinal' with signature '"ChemoProtSet"': no definition for class "ChemoProtSet"
in method for 'getParameters' with signature '"ChemoProtSet"': no definition for class "ChemoProtSet"
in method for 'getDatasets' with signature '"ChemoProtSet"': no definition for class "ChemoProtSet"
in method for 'boxplot' with signature '"ChemoProtSet"': no definition for class "ChemoProtSet"
in method for 'corrPlot' with signature '"ChemoProtSet"': no definition for class "ChemoProtSet"
in method for 'densityPlot' with signature '"ChemoProtSet"': no definition for class "ChemoProtSet"
Creating a new generic function for 'meanSdPlot' in package 'Doscheda'
** help
*** installing help indices
converting help for package 'Doscheda'
finding HTML links ... done
ChemoProtSet-class html
boxplot-ChemoProtSet-method html
corrPlot-methods html
densityPlot-methods html
doscheda html
doschedaApp html
doschedaData html
fitModel-methods html
getDatasets-methods html
getFinal-methods html
getInput-methods html
getNorm-methods html
getParameters-methods html
makeReport html
meanSdPlot-methods html
pcaPlot-methods html
plot.ChemoProtSet html
processedExample html
removePeptides-methods html
replicatePlot-methods html
runDoscheda html
runNormalisation-methods html
setData-methods html
setParameters-methods html
volcanoPlot-methods html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'Doscheda' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'Doscheda' as Doscheda_1.5.1.zip
* DONE (Doscheda)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'Doscheda' successfully unpacked and MD5 sums checked
|
Doscheda.Rcheck/tests_i386/testthat.Rout
R Under development (unstable) (2019-03-09 r76216) -- "Unsuffered Consequences"
Copyright (C) 2019 The R Foundation for Statistical Computing
Platform: i386-w64-mingw32/i386 (32-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(Doscheda)
>
> test_check("Doscheda")
== testthat results ===========================================================
OK: 1 SKIPPED: 0 FAILED: 0
>
> proc.time()
user system elapsed
6.84 0.56 9.60
|
Doscheda.Rcheck/tests_x64/testthat.Rout
R Under development (unstable) (2019-03-09 r76216) -- "Unsuffered Consequences"
Copyright (C) 2019 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(Doscheda)
>
> test_check("Doscheda")
== testthat results ===========================================================
OK: 1 SKIPPED: 0 FAILED: 0
>
> proc.time()
user system elapsed
7.23 0.56 9.93
|
|
Doscheda.Rcheck/examples_i386/Doscheda-Ex.timings
|
Doscheda.Rcheck/examples_x64/Doscheda-Ex.timings
|