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BUILD BIN report for DirichletMultinomial on celaya2

This page was generated on 2019-04-09 13:04:52 -0400 (Tue, 09 Apr 2019).

Package 434/1703HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
DirichletMultinomial 1.25.1
Martin Morgan
Snapshot Date: 2019-04-08 17:01:18 -0400 (Mon, 08 Apr 2019)
URL: https://git.bioconductor.org/packages/DirichletMultinomial
Branch: master
Last Commit: 2bd4ba5
Last Changed Date: 2019-01-04 13:29:43 -0400 (Fri, 04 Jan 2019)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK [ OK ]UNNEEDED, same version exists in internal repository
merida2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK 

Summary

Package: DirichletMultinomial
Version: 1.25.1
Command: rm -rf DirichletMultinomial.buildbin-libdir && mkdir DirichletMultinomial.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh DirichletMultinomial_1.25.1.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R DirichletMultinomial.buildbin-libdir
StartedAt: 2019-04-09 06:56:48 -0400 (Tue, 09 Apr 2019)
EndedAt: 2019-04-09 06:57:03 -0400 (Tue, 09 Apr 2019)
EllapsedTime: 14.3 seconds
RetCode: 0
Status:  OK 
PackageFile: DirichletMultinomial_1.25.1.tgz
PackageFileSize: 788.5 KiB

Command output

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### Running command:
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###   rm -rf DirichletMultinomial.buildbin-libdir && mkdir DirichletMultinomial.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh DirichletMultinomial_1.25.1.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R DirichletMultinomial.buildbin-libdir
###
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>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=DirichletMultinomial.buildbin-libdir DirichletMultinomial_1.25.1.tar.gz'
>>>>>>> 

* installing *source* package ‘DirichletMultinomial’ ...
** using staged installation
** libs
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include `gsl-config --cflags` -DR_DIRICHLETMULTINOMIAL -fPIC  -Wall -g -O2  -c R_init_DirichletMultinomial.c -o R_init_DirichletMultinomial.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include `gsl-config --cflags` -DR_DIRICHLETMULTINOMIAL -fPIC  -Wall -g -O2  -c dirichlet_fit.c -o dirichlet_fit.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include `gsl-config --cflags` -DR_DIRICHLETMULTINOMIAL -fPIC  -Wall -g -O2  -c dirichlet_fit_main.c -o dirichlet_fit_main.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o DirichletMultinomial.so R_init_DirichletMultinomial.o dirichlet_fit.o dirichlet_fit_main.o -L/usr/local/lib -lgsl -lgslcblas -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.9-bioc/meat/DirichletMultinomial.buildbin-libdir/00LOCK-DirichletMultinomial/00new/DirichletMultinomial/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (DirichletMultinomial)


>>>>>>> 
>>>>>>> FIXING LINKS FOR DirichletMultinomial.buildbin-libdir/DirichletMultinomial/libs//DirichletMultinomial.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libgcc_s.1.dylib" "DirichletMultinomial.buildbin-libdir/DirichletMultinomial/libs//DirichletMultinomial.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libgfortran.3.dylib" "DirichletMultinomial.buildbin-libdir/DirichletMultinomial/libs//DirichletMultinomial.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libreadline.5.2.dylib" "DirichletMultinomial.buildbin-libdir/DirichletMultinomial/libs//DirichletMultinomial.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libreadline.dylib" "DirichletMultinomial.buildbin-libdir/DirichletMultinomial/libs//DirichletMultinomial.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libquadmath.0.dylib" "DirichletMultinomial.buildbin-libdir/DirichletMultinomial/libs//DirichletMultinomial.so"