DeMixT 0.99.9
Zeya Wang , Fan Gao
| Snapshot Date: 2019-04-08 17:01:18 -0400 (Mon, 08 Apr 2019) |
| URL: https://git.bioconductor.org/packages/DeMixT |
| Branch: master |
| Last Commit: cf860b0 |
| Last Changed Date: 2019-04-02 15:33:18 -0400 (Tue, 02 Apr 2019) |
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | |  |
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | |
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/DeMixT_0.99.9.tar.gz && rm -rf DeMixT.buildbin-libdir && mkdir DeMixT.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=DeMixT.buildbin-libdir DeMixT_0.99.9.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL DeMixT_0.99.9.zip && rm DeMixT_0.99.9.tar.gz DeMixT_0.99.9.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 547k 100 547k 0 0 8764k 0 --:--:-- --:--:-- --:--:-- 9776k
install for i386
* installing *source* package 'DeMixT' ...
** libs
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -fopenmp -O3 -Wall -std=gnu99 -mtune=generic -c DeMixT.c -o DeMixT.o
DeMixT.c: In function 'Tdemix':
DeMixT.c:253:7: warning: implicit declaration of function 'Rprintf' [-Wimplicit-function-declaration]
if (nHavepi != 1) Rprintf("Iteration %d: updating purities\n", i+1);
^
DeMixT.c:43:9: warning: unused variable 'nthread' [-Wunused-variable]
int nthread=*thread;
^
DeMixT.c:36:45: warning: variable 'st2_sig_2' set but not used [-Wunused-but-set-variable]
double *st1_mu_2, *st2_mu_2, *st1_sig_2, *st2_sig_2;
^
DeMixT.c:36:33: warning: variable 'st1_sig_2' set but not used [-Wunused-but-set-variable]
double *st1_mu_2, *st2_mu_2, *st1_sig_2, *st2_sig_2;
^
DeMixT.c:36:22: warning: variable 'st2_mu_2' set but not used [-Wunused-but-set-variable]
double *st1_mu_2, *st2_mu_2, *st1_sig_2, *st2_sig_2;
^
DeMixT.c:36:11: warning: variable 'st1_mu_2' set but not used [-Wunused-but-set-variable]
double *st1_mu_2, *st2_mu_2, *st1_sig_2, *st2_sig_2;
^
DeMixT.c: In function 'gettumor':
DeMixT.c:540:21: warning: variable 'obj_new' set but not used [-Wunused-but-set-variable]
double obj_old, obj_new;
^
DeMixT.c:540:12: warning: variable 'obj_old' set but not used [-Wunused-but-set-variable]
double obj_old, obj_new;
^
DeMixT.c: In function 'getpi':
DeMixT.c:1229:21: warning: variable 'obj_new' set but not used [-Wunused-but-set-variable]
double obj_old, obj_new;
^
DeMixT.c:1229:12: warning: variable 'obj_old' set but not used [-Wunused-but-set-variable]
double obj_old, obj_new;
^
DeMixT.c: In function 'getpiT':
DeMixT.c:1259:21: warning: variable 'obj_new' set but not used [-Wunused-but-set-variable]
double obj_old, obj_new;
^
DeMixT.c:1259:12: warning: variable 'obj_old' set but not used [-Wunused-but-set-variable]
double obj_old, obj_new;
^
DeMixT.c: In function 'Tdemix':
DeMixT.c:188:11: warning: 'Tavgtmp' may be used uninitialized in this function [-Wmaybe-uninitialized]
if(Tavgtmp <= 0) Tavgtmp = exp(10*log(2.0) + p->Tsigma[j]/2.0*pow(log(2.0), 2.0));
^
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -fopenmp -O3 -Wall -std=gnu99 -mtune=generic -c init.c -o init.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -fopenmp -O3 -Wall -std=gnu99 -mtune=generic -c registerDynamicSymbol.c -o registerDynamicSymbol.o
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o DeMixT.dll tmp.def DeMixT.o init.o registerDynamicSymbol.o -fopenmp -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/DeMixT.buildbin-libdir/00LOCK-DeMixT/00new/DeMixT/libs/i386
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'DeMixT'
finding HTML links ... done
DeMixT html
DeMixT_S1 html
DeMixT_S2 html
Optimum_KernelC html
test.data1.comp1 html
test.data1.truth html
test.data1.y html
test.data2.comp1 html
test.data2.comp2 html
test.data2.truth html
test.data2.y html
test.data3.comp1 html
test.data3.comp2 html
test.data3.truth html
test.data3.y html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'DeMixT' ...
** libs
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -fopenmp -O2 -Wall -std=gnu99 -mtune=generic -c DeMixT.c -o DeMixT.o
DeMixT.c: In function 'Tdemix':
DeMixT.c:253:7: warning: implicit declaration of function 'Rprintf' [-Wimplicit-function-declaration]
if (nHavepi != 1) Rprintf("Iteration %d: updating purities\n", i+1);
^
DeMixT.c:43:9: warning: unused variable 'nthread' [-Wunused-variable]
int nthread=*thread;
^
DeMixT.c:36:45: warning: variable 'st2_sig_2' set but not used [-Wunused-but-set-variable]
double *st1_mu_2, *st2_mu_2, *st1_sig_2, *st2_sig_2;
^
DeMixT.c:36:33: warning: variable 'st1_sig_2' set but not used [-Wunused-but-set-variable]
double *st1_mu_2, *st2_mu_2, *st1_sig_2, *st2_sig_2;
^
DeMixT.c:36:22: warning: variable 'st2_mu_2' set but not used [-Wunused-but-set-variable]
double *st1_mu_2, *st2_mu_2, *st1_sig_2, *st2_sig_2;
^
DeMixT.c:36:11: warning: variable 'st1_mu_2' set but not used [-Wunused-but-set-variable]
double *st1_mu_2, *st2_mu_2, *st1_sig_2, *st2_sig_2;
^
DeMixT.c: In function 'gettumor':
DeMixT.c:540:21: warning: variable 'obj_new' set but not used [-Wunused-but-set-variable]
double obj_old, obj_new;
^
DeMixT.c:540:12: warning: variable 'obj_old' set but not used [-Wunused-but-set-variable]
double obj_old, obj_new;
^
DeMixT.c: In function 'getpi':
DeMixT.c:1229:21: warning: variable 'obj_new' set but not used [-Wunused-but-set-variable]
double obj_old, obj_new;
^
DeMixT.c:1229:12: warning: variable 'obj_old' set but not used [-Wunused-but-set-variable]
double obj_old, obj_new;
^
DeMixT.c: In function 'getpiT':
DeMixT.c:1259:21: warning: variable 'obj_new' set but not used [-Wunused-but-set-variable]
double obj_old, obj_new;
^
DeMixT.c:1259:12: warning: variable 'obj_old' set but not used [-Wunused-but-set-variable]
double obj_old, obj_new;
^
DeMixT.c: In function 'Tdemix':
DeMixT.c:188:11: warning: 'Tavgtmp' may be used uninitialized in this function [-Wmaybe-uninitialized]
if(Tavgtmp <= 0) Tavgtmp = exp(10*log(2.0) + p->Tsigma[j]/2.0*pow(log(2.0), 2.0));
^
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -fopenmp -O2 -Wall -std=gnu99 -mtune=generic -c init.c -o init.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -fopenmp -O2 -Wall -std=gnu99 -mtune=generic -c registerDynamicSymbol.c -o registerDynamicSymbol.o
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o DeMixT.dll tmp.def DeMixT.o init.o registerDynamicSymbol.o -fopenmp -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/DeMixT.buildbin-libdir/DeMixT/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'DeMixT' as DeMixT_0.99.9.zip
* DONE (DeMixT)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'DeMixT' successfully unpacked and MD5 sums checked