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INSTALL report for DEGseq on tokay2

This page was generated on 2019-04-09 11:57:36 -0400 (Tue, 09 Apr 2019).

Package 402/1703HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
DEGseq 1.37.1
Likun Wang
Snapshot Date: 2019-04-08 17:01:18 -0400 (Mon, 08 Apr 2019)
URL: https://git.bioconductor.org/packages/DEGseq
Branch: master
Last Commit: d6b7123
Last Changed Date: 2018-12-03 06:32:19 -0400 (Mon, 03 Dec 2018)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
merida2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK 

Summary

Package: DEGseq
Version: 1.37.1
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/DEGseq_1.37.1.tar.gz && rm -rf DEGseq.buildbin-libdir && mkdir DEGseq.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=DEGseq.buildbin-libdir DEGseq_1.37.1.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL DEGseq_1.37.1.zip && rm DEGseq_1.37.1.tar.gz DEGseq_1.37.1.zip
StartedAt: 2019-04-08 18:51:58 -0400 (Mon, 08 Apr 2019)
EndedAt: 2019-04-08 18:52:52 -0400 (Mon, 08 Apr 2019)
EllapsedTime: 54.0 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/DEGseq_1.37.1.tar.gz && rm -rf DEGseq.buildbin-libdir && mkdir DEGseq.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=DEGseq.buildbin-libdir DEGseq_1.37.1.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL DEGseq_1.37.1.zip && rm DEGseq_1.37.1.tar.gz DEGseq_1.37.1.zip
###
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100 1607k  100 1607k    0     0  16.8M      0 --:--:-- --:--:-- --:--:-- 18.2M

install for i386

* installing *source* package 'DEGseq' ...
** libs
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c getGeneExp.cpp -o getGeneExp.o
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o DEGseq.dll tmp.def getGeneExp.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/DEGseq.buildbin-libdir/00LOCK-DEGseq/00new/DEGseq/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'DEGseq'
    finding HTML links ... done
    DEGexp                                  html  
    DEGexp2                                 html  
    DEGseq                                  html  
    GeneExpExample1000                      html  
    GeneExpExample5000                      html  
    getGeneExp                              html  
    kidneyChr21.bed                         html  
    kidneyChr21Bowtie                       html  
    liverChr21.bed                          html  
    liverChr21Bowtie                        html  
    readGeneExp                             html  
    refFlatChr21                            html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'DEGseq' ...
** libs
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c getGeneExp.cpp -o getGeneExp.o
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o DEGseq.dll tmp.def getGeneExp.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/DEGseq.buildbin-libdir/DEGseq/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'DEGseq' as DEGseq_1.37.1.zip
* DONE (DEGseq)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'DEGseq' successfully unpacked and MD5 sums checked