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BUILD report for ClusterJudge on celaya2

This page was generated on 2019-04-09 13:18:36 -0400 (Tue, 09 Apr 2019).

Package 288/1703HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ClusterJudge 1.5.0
Adrian Pasculescu
Snapshot Date: 2019-04-08 17:01:18 -0400 (Mon, 08 Apr 2019)
URL: https://git.bioconductor.org/packages/ClusterJudge
Branch: master
Last Commit: bbc907c
Last Changed Date: 2018-11-05 10:55:24 -0400 (Mon, 05 Nov 2018)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
celaya2 OS X 10.11.6 El Capitan / x86_64  OK [ ERROR ] skipped  skipped 
merida2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK 

Summary

Package: ClusterJudge
Version: 1.5.0
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data ClusterJudge
StartedAt: 2019-04-08 22:35:11 -0400 (Mon, 08 Apr 2019)
EndedAt: 2019-04-08 22:37:05 -0400 (Mon, 08 Apr 2019)
EllapsedTime: 113.4 seconds
RetCode: 1
Status:  ERROR 
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data ClusterJudge
###
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* checking for file ‘ClusterJudge/DESCRIPTION’ ... OK
* preparing ‘ClusterJudge’:
* checking DESCRIPTION meta-information ... OK
* installing the package to process help pages
* saving partial Rd database
* creating vignettes ... ERROR
--- re-building ‘ClusterJudge-intro.Rmd’ using rmarkdown
Loading ClusterJudge
Loading required package: infotheo
Loading required package: lattice
Loading required package: latticeExtra
Loading required package: RColorBrewer
Loading required package: httr
Loading required package: jsonlite
Loading required package: graph
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following object is masked from 'package:ClusterJudge':

    sd

The following objects are masked from 'package:stats':

    IQR, mad, sd, var, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, basename, cbind, colMeans, colSums, colnames,
    dirname, do.call, duplicated, eval, evalq, get, grep, grepl,
    intersect, is.unsorted, lapply, mapply, match, mget, order,
    paste, pmax, pmax.int, pmin, pmin.int, rank, rbind, rowMeans,
    rowSums, rownames, sapply, setdiff, sort, table, tapply,
    union, unique, unsplit, which, which.max, which.min

Error parsing references: Could not read as Int: "October"
Error running filter /usr/local/bin/pandoc-citeproc:
Filter returned error status 1
Error: processing vignette 'ClusterJudge-intro.Rmd' failed with diagnostics:
pandoc document conversion failed with error 83
--- failed re-building ‘ClusterJudge-intro.Rmd’

SUMMARY: processing the following file failed:
  ‘ClusterJudge-intro.Rmd’

Error: Vignette re-building failed.
Execution halted