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INSTALL report for ChIPanalyser on tokay2

This page was generated on 2019-04-09 12:32:25 -0400 (Tue, 09 Apr 2019).

Package 251/1703HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ChIPanalyser 1.4.1
Patrick C.N. Martin
Snapshot Date: 2019-04-08 17:01:18 -0400 (Mon, 08 Apr 2019)
URL: https://git.bioconductor.org/packages/ChIPanalyser
Branch: master
Last Commit: d171c5a
Last Changed Date: 2019-04-05 05:08:22 -0400 (Fri, 05 Apr 2019)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  OK  OK NO, built version is LOWER than in internal repository!!!
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  WARNINGS  OK NO, built version is LOWER than in internal repository!!!
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK NO, built version is LOWER than in internal repository!!!
merida2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK 

Summary

Package: ChIPanalyser
Version: 1.4.1
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/ChIPanalyser_1.4.1.tar.gz && rm -rf ChIPanalyser.buildbin-libdir && mkdir ChIPanalyser.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ChIPanalyser.buildbin-libdir ChIPanalyser_1.4.1.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL ChIPanalyser_1.4.1.zip && rm ChIPanalyser_1.4.1.tar.gz ChIPanalyser_1.4.1.zip
StartedAt: 2019-04-08 20:15:20 -0400 (Mon, 08 Apr 2019)
EndedAt: 2019-04-08 20:16:26 -0400 (Mon, 08 Apr 2019)
EllapsedTime: 66.3 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/ChIPanalyser_1.4.1.tar.gz && rm -rf ChIPanalyser.buildbin-libdir && mkdir ChIPanalyser.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ChIPanalyser.buildbin-libdir ChIPanalyser_1.4.1.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL ChIPanalyser_1.4.1.zip && rm ChIPanalyser_1.4.1.tar.gz ChIPanalyser_1.4.1.zip
###
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100  554k  100  554k    0     0  8577k      0 --:--:-- --:--:-- --:--:-- 9726k

install for i386

* installing *source* package 'ChIPanalyser' ...
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'ChIPanalyser'
    finding HTML links ... done
    AllSitesAboveThreshold                  html  
    finding level-2 HTML links ... done

    BPFrequency                             html  
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmpcj28vt/R.INSTALL1e5850013b60/ChIPanalyser/man/BPFrequency.Rd:32: file link 'DNAStringSet' in package 'Biostrings' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmpcj28vt/R.INSTALL1e5850013b60/ChIPanalyser/man/BPFrequency.Rd:34: file link 'DNAStringSet' in package 'Biostrings' does not exist and so has been treated as a topic
    BPFrequency_-                           html  
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmpcj28vt/R.INSTALL1e5850013b60/ChIPanalyser/man/BPFrequency_-.Rd:41: file link 'DNAStringSet' in package 'Biostrings' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmpcj28vt/R.INSTALL1e5850013b60/ChIPanalyser/man/BPFrequency_-.Rd:59: file link 'DNAStringSet' in package 'Biostrings' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmpcj28vt/R.INSTALL1e5850013b60/ChIPanalyser/man/BPFrequency_-.Rd:60: file link 'DNAStringSet' in package 'Biostrings' does not exist and so has been treated as a topic
    ChIPanalyser-package                    html  
    DNASequenceLength                       html  
    DNASequenceLength_-                     html  
    GRList-class                            html  
    NoAccess                                html  
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmpcj28vt/R.INSTALL1e5850013b60/ChIPanalyser/man/NoAccess.Rd:28: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
    PFMFormat                               html  
    PFMFormat_                              html  
    PWMThreshold                            html  
    PWMThreshold_-                          html  
    PWMpseudocount                          html  
    PWMpseudocount_-                        html  
    PositionFrequencyMatrix                 html  
    PositionFrequencyMatrix_-               html  
    PositionWeightMatrix                    html  
    PositionWeightMatrix_-                  html  
    ScalingFactorPWM                        html  
    ScalingFactorPWM_-                      html  
    averageExpPWMScore                      html  
    backgroundSignal                        html  
    backgroundSignal_-                      html  
    boundMolecules                          html  
    boundMolecules_-                        html  
    chipMean                                html  
    chipMean_-                              html  
    chipSd                                  html  
    chipSd_-                                html  
    chipSmooth                              html  
    chipSmooth_-                            html  
    computeChipProfile                      html  
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmpcj28vt/R.INSTALL1e5850013b60/ChIPanalyser/man/computeChipProfile.Rd:19: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmpcj28vt/R.INSTALL1e5850013b60/ChIPanalyser/man/computeChipProfile.Rd:22: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmpcj28vt/R.INSTALL1e5850013b60/ChIPanalyser/man/computeChipProfile.Rd:92: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
    computeGenomeWidePWMScore               html  
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmpcj28vt/R.INSTALL1e5850013b60/ChIPanalyser/man/computeGenomeWidePWMScore.Rd:20: file link 'DNAStringSet' in package 'Biostrings' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmpcj28vt/R.INSTALL1e5850013b60/ChIPanalyser/man/computeGenomeWidePWMScore.Rd:23: file link 'DNAStringSet' in package 'Biostrings' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmpcj28vt/R.INSTALL1e5850013b60/ChIPanalyser/man/computeGenomeWidePWMScore.Rd:34: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
    computeOccupancy                        html  
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmpcj28vt/R.INSTALL1e5850013b60/ChIPanalyser/man/computeOccupancy.Rd:72: file link 'GRangesList' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmpcj28vt/R.INSTALL1e5850013b60/ChIPanalyser/man/computeOccupancy.Rd:74: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
    computeOptimal                          html  
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmpcj28vt/R.INSTALL1e5850013b60/ChIPanalyser/man/computeOptimal.Rd:24: file link 'DNAStringSet' in package 'Biostrings' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmpcj28vt/R.INSTALL1e5850013b60/ChIPanalyser/man/computeOptimal.Rd:40: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmpcj28vt/R.INSTALL1e5850013b60/ChIPanalyser/man/computeOptimal.Rd:45: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmpcj28vt/R.INSTALL1e5850013b60/ChIPanalyser/man/computeOptimal.Rd:87: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
    computePWMScore                         html  
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmpcj28vt/R.INSTALL1e5850013b60/ChIPanalyser/man/computePWMScore.Rd:20: file link 'DNAStringSet' in package 'Biostrings' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmpcj28vt/R.INSTALL1e5850013b60/ChIPanalyser/man/computePWMScore.Rd:28: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmpcj28vt/R.INSTALL1e5850013b60/ChIPanalyser/man/computePWMScore.Rd:32: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmpcj28vt/R.INSTALL1e5850013b60/ChIPanalyser/man/computePWMScore.Rd:58: file link 'GRangesList' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmpcj28vt/R.INSTALL1e5850013b60/ChIPanalyser/man/computePWMScore.Rd:59: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
    data                                    html  
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmpcj28vt/R.INSTALL1e5850013b60/ChIPanalyser/man/data.Rd:24: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmpcj28vt/R.INSTALL1e5850013b60/ChIPanalyser/man/data.Rd:26: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmpcj28vt/R.INSTALL1e5850013b60/ChIPanalyser/man/data.Rd:33: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
    genomicProfileParameters-class          html  
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmpcj28vt/R.INSTALL1e5850013b60/ChIPanalyser/man/genomicProfileParameters-class.Rd:90: file link 'DNAStringSet' in package 'Biostrings' does not exist and so has been treated as a topic
    genomicProfileParameters                html  
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmpcj28vt/R.INSTALL1e5850013b60/ChIPanalyser/man/genomicProfileParameters.Rd:63: file link 'DNAStringSet' in package 'Biostrings' does not exist and so has been treated as a topic
    maxPWMScore                             html  
    maxSignal                               html  
    maxSignal_-                             html  
    minPWMScore                             html  
    naturalLog                              html  
    naturalLog_-                            html  
    noOfSites                               html  
    noOfSites_-                             html  
    occupancyProfileParameters-class        html  
    occupancyProfileParameters              html  
    ploidy                                  html  
    ploidy_-                                html  
    plotOccupancyProfile                    html  
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmpcj28vt/R.INSTALL1e5850013b60/ChIPanalyser/man/plotOccupancyProfile.Rd:21: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmpcj28vt/R.INSTALL1e5850013b60/ChIPanalyser/man/plotOccupancyProfile.Rd:27: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmpcj28vt/R.INSTALL1e5850013b60/ChIPanalyser/man/plotOccupancyProfile.Rd:35: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmpcj28vt/R.INSTALL1e5850013b60/ChIPanalyser/man/plotOccupancyProfile.Rd:40: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmpcj28vt/R.INSTALL1e5850013b60/ChIPanalyser/man/plotOccupancyProfile.Rd:58: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
    plotOptimalHeatMaps                     html  
    processingChIPseq                       html  
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmpcj28vt/R.INSTALL1e5850013b60/ChIPanalyser/man/processingChIPseq.Rd:26: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmpcj28vt/R.INSTALL1e5850013b60/ChIPanalyser/man/processingChIPseq.Rd:30: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmpcj28vt/R.INSTALL1e5850013b60/ChIPanalyser/man/processingChIPseq.Rd:52: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
    profileAccuracyEstimate                 html  
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmpcj28vt/R.INSTALL1e5850013b60/ChIPanalyser/man/profileAccuracyEstimate.Rd:27: file link 'GRangesList' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmpcj28vt/R.INSTALL1e5850013b60/ChIPanalyser/man/profileAccuracyEstimate.Rd:28: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
    removeBackground                        html  
    removeBackground_-                      html  
    searchSites                             html  
    stepSize                                html  
    stepSize_-                              html  
    strandRule                              html  
    strandRule_-                            html  
    whichstrand                             html  
    whichstrand_-                           html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'ChIPanalyser' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'ChIPanalyser' as ChIPanalyser_1.4.1.zip
* DONE (ChIPanalyser)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'ChIPanalyser' successfully unpacked and MD5 sums checked