Package: CellScore

Version: 1.3.0

Command: C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:CellScore.install-out.txt --library=C:\Users\biocbuild\bbs-3.9-bioc\R\library --no-vignettes --timings CellScore_1.3.0.tar.gz

StartedAt: 2019-04-09 01:38:34 -0400 (Tue, 09 Apr 2019)

EndedAt: 2019-04-09 01:48:44 -0400 (Tue, 09 Apr 2019)

EllapsedTime: 610.4 seconds

RetCode: 0

Status:  OK

CheckDir: CellScore.Rcheck

Warnings: 0

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### Running command:
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###   C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:CellScore.install-out.txt --library=C:\Users\biocbuild\bbs-3.9-bioc\R\library --no-vignettes --timings CellScore_1.3.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.9-bioc/meat/CellScore.Rcheck'
* using R Under development (unstable) (2019-03-09 r76216)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'CellScore/DESCRIPTION' ... OK
* this is package 'CellScore' version '1.3.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'CellScore' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
                                user system elapsed
CellScoreReport                47.42   1.34   48.80
heatmapOnOffMarkers            28.57   0.06   28.62
extractTransitions             26.62   0.11   26.74
PlotCosineSimHeatmap           25.42   0.14   25.56
RugplotCellScore               23.47   0.18   23.66
ScatterplotCellScoreComponents 22.03   0.16   22.19
BoxplotCellScore               18.96   0.87   19.83
CellScore                      19.03   0.68   19.70
CosineSimScore                 15.30   1.28   16.57
PcaStandards                   15.32   0.08   15.39
BarplotOnOff                   12.44   1.04   14.27
OnOff                           9.64   0.16    9.80
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
                                user system elapsed
CellScoreReport                40.40   0.61   41.02
ScatterplotCellScoreComponents 34.17   0.27   34.44
heatmapOnOffMarkers            29.90   0.48   30.39
extractTransitions             29.52   0.22   29.74
RugplotCellScore               25.02   0.28   25.29
PlotCosineSimHeatmap           23.01   0.23   23.27
CellScore                      21.32   0.39   22.42
BoxplotCellScore               19.98   0.41   20.44
PcaStandards                   17.86   0.21   18.08
CosineSimScore                 14.27   0.30   14.56
BarplotOnOff                   10.94   0.72   11.66
OnOff                           7.02   0.26    7.29
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

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###
### Running command:
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###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/CellScore_1.3.0.tar.gz && rm -rf CellScore.buildbin-libdir && mkdir CellScore.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CellScore.buildbin-libdir CellScore_1.3.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL CellScore_1.3.0.zip && rm CellScore_1.3.0.tar.gz CellScore_1.3.0.zip
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

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100 4211k  100 4211k    0     0  37.1M      0 --:--:-- --:--:-- --:--:-- 39.5M

install for i386

* installing *source* package 'CellScore' ...
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'CellScore'
    finding HTML links ... done
    BarplotOnOff                            html  
    BoxplotCellScore                        html  
    CellScore                               html  
    CellScoreReport                         html  
    CosineSimScore                          html  
    OnOff                                   html  
    PcaStandards                            html  
    PlotCosineSimHeatmap                    html  
    RugplotCellScore                        html  
    ScatterplotCellScoreComponents          html  
    extractTransitions                      html  
    heatmapOnOffMarkers                     html  
    rugplotDonorTargetTest                  html  
    scatterplotDonorTargetTest              html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'CellScore' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'CellScore' as CellScore_1.3.0.zip
* DONE (CellScore)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'CellScore' successfully unpacked and MD5 sums checked