Package: COCOA

Version: 1.1.2

Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/COCOA_1.1.2.tar.gz && rm -rf COCOA.buildbin-libdir && mkdir COCOA.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=COCOA.buildbin-libdir COCOA_1.1.2.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL COCOA_1.1.2.zip && rm COCOA_1.1.2.tar.gz COCOA_1.1.2.zip

StartedAt: 2019-04-08 20:14:28 -0400 (Mon, 08 Apr 2019)

EndedAt: 2019-04-08 20:15:53 -0400 (Mon, 08 Apr 2019)

EllapsedTime: 85.0 seconds

RetCode: 0

Status:  OK

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### Running command:
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###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/COCOA_1.1.2.tar.gz && rm -rf COCOA.buildbin-libdir && mkdir COCOA.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=COCOA.buildbin-libdir COCOA_1.1.2.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL COCOA_1.1.2.zip && rm COCOA_1.1.2.tar.gz COCOA_1.1.2.zip
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install for i386

* installing *source* package 'COCOA' ...
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'COCOA'
    finding HTML links ... done
    COCOA                                   html  
    aggregateLoadings                       html  
    atf3_chr1                               html  
    brcaLoadings1                           html  
    brcaMCoord1                             html  
    brcaMethylData1                         html  
    brcaPCScores                            html  
    brcaPCScores657                         html  
    esr1_chr1                               html  
    gata3_chr1                              html  
    getLoadingProfile                       html  
    nrf1_chr1                               html  
    regionQuantileByPC                      html  
    rsRankingIndex                          html  
    rsScoreHeatmap                          html  
    rsScores                                html  
    runCOCOA                                html  
    signalAlongPC                           html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'COCOA' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'COCOA' as COCOA_1.1.2.zip
* DONE (COCOA)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'COCOA' successfully unpacked and MD5 sums checked