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BUILD report for CNVrd2 on tokay2

This page was generated on 2019-04-09 12:14:28 -0400 (Tue, 09 Apr 2019).

Package 307/1703HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
CNVrd2 1.21.0
Hoang Tan Nguyen
Snapshot Date: 2019-04-08 17:01:18 -0400 (Mon, 08 Apr 2019)
URL: https://git.bioconductor.org/packages/CNVrd2
Branch: master
Last Commit: 4349e53
Last Changed Date: 2018-10-30 11:54:32 -0400 (Tue, 30 Oct 2018)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK [ ERROR ] skipped  skipped 
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
merida2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK 

Summary

Package: CNVrd2
Version: 1.21.0
Command: chmod a+r CNVrd2 -R && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data CNVrd2
StartedAt: 2019-04-08 22:07:31 -0400 (Mon, 08 Apr 2019)
EndedAt: 2019-04-08 22:08:35 -0400 (Mon, 08 Apr 2019)
EllapsedTime: 64.3 seconds
RetCode: 1
Status:  ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   chmod a+r CNVrd2 -R && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data CNVrd2
###
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* checking for file 'CNVrd2/DESCRIPTION' ... OK
* preparing 'CNVrd2':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'CNVrd2.Rnw' using knitr
[W::bcf_hdr_check_sanity] GL should be declared as Number=G
Quitting from lines 186-200 (CNVrd2.Rnw) 
Error: processing vignette 'CNVrd2.Rnw' failed with diagnostics:
invalid class "VCFHeader" object: 1: 'info(VCFHeader)' must be a 3 column DataFrame with names Number, Type, Description
invalid class "VCFHeader" object: 2: 'geno(VCFHeader)' must be a 3 column DataFrame with names Number, Type, Description
--- failed re-building 'CNVrd2.Rnw'

SUMMARY: processing the following file failed:
  'CNVrd2.Rnw'

Error: Vignette re-building failed.
Execution halted