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INSTALL report for CNVRanger on tokay2

This page was generated on 2019-04-09 12:44:02 -0400 (Tue, 09 Apr 2019).

Package 306/1703HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
CNVRanger 0.99.26
Ludwig Geistlinger
Snapshot Date: 2019-04-08 17:01:18 -0400 (Mon, 08 Apr 2019)
URL: https://git.bioconductor.org/packages/CNVRanger
Branch: master
Last Commit: 2466112
Last Changed Date: 2019-04-06 18:33:07 -0400 (Sat, 06 Apr 2019)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
merida2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK 

Summary

Package: CNVRanger
Version: 0.99.26
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/CNVRanger_0.99.26.tar.gz && rm -rf CNVRanger.buildbin-libdir && mkdir CNVRanger.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CNVRanger.buildbin-libdir CNVRanger_0.99.26.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL CNVRanger_0.99.26.zip && rm CNVRanger_0.99.26.tar.gz CNVRanger_0.99.26.zip
StartedAt: 2019-04-08 20:36:06 -0400 (Mon, 08 Apr 2019)
EndedAt: 2019-04-08 20:37:14 -0400 (Mon, 08 Apr 2019)
EllapsedTime: 68.2 seconds
RetCode: 0
Status:  OK  

Command output

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### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/CNVRanger_0.99.26.tar.gz && rm -rf CNVRanger.buildbin-libdir && mkdir CNVRanger.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CNVRanger.buildbin-libdir CNVRanger_0.99.26.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL CNVRanger_0.99.26.zip && rm CNVRanger_0.99.26.tar.gz CNVRanger_0.99.26.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
  0  385k    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100  385k  100  385k    0     0   372k      0  0:00:01  0:00:01 --:--:--  374k

install for i386

* installing *source* package 'CNVRanger' ...
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'CNVRanger'
    finding HTML links ... done
    cnvEQTL                                 html  
    finding level-2 HTML links ... done

    cnvGWAS                                 html  
    generateGDS                             html  
    importLrrBaf                            html  
    plotManhattan                           html  
    populationRanges                        html  
    setupCnvGWAS                            html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'CNVRanger' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'CNVRanger' as CNVRanger_0.99.26.zip
* DONE (CNVRanger)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'CNVRanger' successfully unpacked and MD5 sums checked