Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-04-09 13:20:29 -0400 (Tue, 09 Apr 2019).
Package 197/1703 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
CAGEfightR 1.3.0 Malte Thodberg
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||
celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | [ OK ] | OK | |||||||
merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
Package: CAGEfightR |
Version: 1.3.0 |
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:CAGEfightR.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings CAGEfightR_1.3.0.tar.gz |
StartedAt: 2019-04-09 00:20:46 -0400 (Tue, 09 Apr 2019) |
EndedAt: 2019-04-09 00:28:34 -0400 (Tue, 09 Apr 2019) |
EllapsedTime: 468.2 seconds |
RetCode: 0 |
Status: OK |
CheckDir: CAGEfightR.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:CAGEfightR.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings CAGEfightR_1.3.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.9-bioc/meat/CAGEfightR.Rcheck’ * using R Under development (unstable) (2019-03-18 r76245) * using platform: x86_64-apple-darwin15.6.0 (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘CAGEfightR/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘CAGEfightR’ version ‘1.3.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘CAGEfightR’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU or elapsed time > 5s user system elapsed assignGeneID 5.38 0.324 5.801 findLinks 3.64 1.839 4.006 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
CAGEfightR.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL CAGEfightR ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/3.6/Resources/library’ * installing *source* package ‘CAGEfightR’ ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (CAGEfightR)
CAGEfightR.Rcheck/CAGEfightR-Ex.timings
name | user | system | elapsed | |
assignGeneID | 5.380 | 0.324 | 5.801 | |
assignMissingID | 1.687 | 0.117 | 1.839 | |
assignTxID | 1.502 | 0.096 | 1.598 | |
assignTxType | 0.001 | 0.001 | 0.002 | |
balanceBC | 0.001 | 0.000 | 0.002 | |
balanceD | 0.001 | 0.000 | 0.002 | |
bwCommonGenome | 0.171 | 0.018 | 0.194 | |
bwGenomeCompatibility | 0.028 | 0.003 | 0.031 | |
bwValid | 0.012 | 0.005 | 0.016 | |
calcBidirectionality | 0.915 | 0.081 | 0.997 | |
calcComposition | 3.242 | 0.133 | 3.377 | |
calcPooled | 0.150 | 0.028 | 0.178 | |
calcShape | 4.328 | 0.192 | 4.521 | |
calcSupport | 0.133 | 0.014 | 0.147 | |
calcTPM | 0.197 | 0.020 | 0.217 | |
calcTotalTags | 0.139 | 0.021 | 0.160 | |
checkPeaked | 0.115 | 0.003 | 0.118 | |
checkPooled | 0.082 | 0.018 | 0.101 | |
clusterBidirectionally | 0.001 | 0.000 | 0.002 | |
clusterUnidirectionally | 2.243 | 0.075 | 2.318 | |
combineClusters | 1.166 | 0.052 | 1.219 | |
exampleDesign | 0.015 | 0.018 | 0.033 | |
findLinks | 3.640 | 1.839 | 4.006 | |
findStretches | 0.798 | 0.149 | 0.948 | |
quantifyCTSSs | 0.001 | 0.000 | 0.001 | |
quantifyClusters | 0.886 | 0.189 | 1.074 | |
quantifyGenes | 2.316 | 0.285 | 2.648 | |
quickEnhancers | 0 | 0 | 0 | |
quickTSSs | 0.000 | 0.000 | 0.001 | |
shapeEntropy | 0.000 | 0.001 | 0.001 | |
shapeIQR | 0.001 | 0.001 | 0.001 | |
shapeMultimodality | 0.001 | 0.001 | 0.000 | |
subsetByBidirectionality | 0.623 | 0.100 | 0.723 | |
subsetByComposition | 1.949 | 0.145 | 2.095 | |
subsetBySupport | 0.089 | 0.003 | 0.092 | |
swapRanges | 0.193 | 0.016 | 0.209 | |
swapScores | 1.418 | 0.428 | 1.845 | |
trackBalance | 0.001 | 0.001 | 0.001 | |
trackCTSS | 3.945 | 0.135 | 4.082 | |
trackClusters | 2.667 | 0.095 | 2.763 | |
trackLinks | 2.218 | 0.795 | 2.452 | |
trimToPeak | 1.375 | 0.256 | 1.630 | |
trimToPercentiles | 2.822 | 0.266 | 3.089 | |
tuneTagClustering | 0.000 | 0.001 | 0.001 | |