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INSTALL report for splatter on tokay1

This page was generated on 2019-04-13 11:27:28 -0400 (Sat, 13 Apr 2019).

Package 1491/1649HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
splatter 1.6.1
Luke Zappia
Snapshot Date: 2019-04-12 17:01:30 -0400 (Fri, 12 Apr 2019)
URL: https://git.bioconductor.org/packages/splatter
Branch: RELEASE_3_8
Last Commit: b809a81
Last Changed Date: 2018-12-05 17:48:38 -0400 (Wed, 05 Dec 2018)
malbec1 Linux (Ubuntu 16.04.6 LTS) / x86_64  OK  OK  NA 
tokay1 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
merida1 OS X 10.11.6 El Capitan / x86_64  OK  OK  ERROR  OK 

Summary

Package: splatter
Version: 1.6.1
Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/splatter_1.6.1.tar.gz && rm -rf splatter.buildbin-libdir && mkdir splatter.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=splatter.buildbin-libdir splatter_1.6.1.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL splatter_1.6.1.zip && rm splatter_1.6.1.tar.gz splatter_1.6.1.zip
StartedAt: 2019-04-12 20:33:29 -0400 (Fri, 12 Apr 2019)
EndedAt: 2019-04-12 20:34:58 -0400 (Fri, 12 Apr 2019)
EllapsedTime: 88.8 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/splatter_1.6.1.tar.gz && rm -rf splatter.buildbin-libdir && mkdir splatter.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=splatter.buildbin-libdir splatter_1.6.1.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL splatter_1.6.1.zip && rm splatter_1.6.1.tar.gz splatter_1.6.1.zip
###
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install for i386

* installing *source* package 'splatter' ...
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'splatter'
    finding HTML links ... done
    BASiCSEstimate                          html  
    BASiCSParams                            html  
    BASiCSSimulate                          html  
    Lun2Params                              html  
    LunParams                               html  
    MFAParams                               html  
    Params                                  html  
    PhenoParams                             html  
    SCDDParams                              html  
    SimpleParams                            html  
    SparseDCParams                          html  
    SplatParams                             html  
    ZINBParams                              html  
    addFeatureStats                         html  
    finding level-2 HTML links ... done

    addGeneLengths                          html  
    bridge                                  html  
    compareSCEs                             html  
    diffSCEs                                html  
    expandParams                            html  
    getLNormFactors                         html  
    getParam                                html  
    getParams                               html  
    getPathOrder                            html  
    listSims                                html  
    logistic                                html  
    lun2Estimate                            html  
    lun2Simulate                            html  
    lunEstimate                             html  
    lunSimulate                             html  
    makeCompPanel                           html  
    makeDiffPanel                           html  
    makeOverallPanel                        html  
    mfaEstimate                             html  
    mfaSimulate                             html  
    newParams                               html  
    phenoEstimate                           html  
    phenoSimulate                           html  
    rbindMatched                            html  
    scDDEstimate                            html  
    scDDSimulate                            html  
    setParam                                html  
    setParamUnchecked                       html  
    setParams                               html  
    setParamsUnchecked                      html  
    showDFs                                 html  
    showPP                                  html  
    showValues                              html  
    simpleEstimate                          html  
    simpleSimulate                          html  
    sparseDCEstimate                        html  
    sparseDCSimulate                        html  
    splatEstBCV                             html  
    splatEstDropout                         html  
    splatEstLib                             html  
    splatEstMean                            html  
    splatEstOutlier                         html  
    splatEstimate                           html  
    splatSimBCVMeans                        html  
    splatSimBatchCellMeans                  html  
    splatSimBatchEffects                    html  
    splatSimCellMeans                       html  
    splatSimDE                              html  
    splatSimDropout                         html  
    splatSimGeneMeans                       html  
    splatSimLibSizes                        html  
    splatSimTrueCounts                      html  
    splatSimulate                           html  
    splatter                                html  
    summariseDiff                           html  
    winsorize                               html  
    zinbEstimate                            html  
    zinbSimulate                            html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'splatter' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'splatter' as splatter_1.6.1.zip
* DONE (splatter)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.8-bioc/R/library'
package 'splatter' successfully unpacked and MD5 sums checked
In R CMD INSTALL