Back to Multiple platform build/check report for BioC 3.8
ABCDEFGHIJKLMNOPQR[S]TUVWXYZ

INSTALL report for sangerseqR on tokay1

This page was generated on 2019-04-13 11:23:33 -0400 (Sat, 13 Apr 2019).

Package 1383/1649HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
sangerseqR 1.18.0
Jonathon Hill
Snapshot Date: 2019-04-12 17:01:30 -0400 (Fri, 12 Apr 2019)
URL: https://git.bioconductor.org/packages/sangerseqR
Branch: RELEASE_3_8
Last Commit: b42e866
Last Changed Date: 2018-10-30 11:41:53 -0400 (Tue, 30 Oct 2018)
malbec1 Linux (Ubuntu 16.04.6 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64 [ OK ] OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
merida1 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: sangerseqR
Version: 1.18.0
Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/sangerseqR_1.18.0.tar.gz && rm -rf sangerseqR.buildbin-libdir && mkdir sangerseqR.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=sangerseqR.buildbin-libdir sangerseqR_1.18.0.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL sangerseqR_1.18.0.zip && rm sangerseqR_1.18.0.tar.gz sangerseqR_1.18.0.zip
StartedAt: 2019-04-12 19:10:46 -0400 (Fri, 12 Apr 2019)
EndedAt: 2019-04-12 19:11:55 -0400 (Fri, 12 Apr 2019)
EllapsedTime: 69.0 seconds
RetCode: 0
Status:  OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/sangerseqR_1.18.0.tar.gz && rm -rf sangerseqR.buildbin-libdir && mkdir sangerseqR.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=sangerseqR.buildbin-libdir sangerseqR_1.18.0.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL sangerseqR_1.18.0.zip && rm sangerseqR_1.18.0.tar.gz sangerseqR_1.18.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 1203k  100 1203k    0     0  20.3M      0 --:--:-- --:--:-- --:--:-- 21.7M

install for i386

* installing *source* package 'sangerseqR' ...
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'sangerseqR'
    finding HTML links ... done
    PolyPeakParser                          html  
    abif-class                              html  
    chromatogram                            html  
    makeBaseCalls                           html  
    read.abif                               html  
    read.scf                                html  
    readsangerseq                           html  
    sangerseq-class                         html  
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/Rtmpuku0jt/R.INSTALL86017625018/sangerseqR/man/sangerseq-class.Rd:36: file link 'DNAString' in package 'Biostrings' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/Rtmpuku0jt/R.INSTALL86017625018/sangerseqR/man/sangerseq-class.Rd:39: file link 'DNAString' in package 'Biostrings' does not exist and so has been treated as a topic
    sangerseqAccessors                      html  
    finding level-2 HTML links ... done

    sangerseqR-package                      html  
    scf-class                               html  
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/Rtmpuku0jt/R.INSTALL86017625018/sangerseqR/man/scf-class.Rd:28: file link 'DNAString' in package 'Biostrings' does not exist and so has been treated as a topic
    setAllelePhase                          html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'sangerseqR' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'sangerseqR' as sangerseqR_1.18.0.zip
* DONE (sangerseqR)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.8-bioc/R/library'
package 'sangerseqR' successfully unpacked and MD5 sums checked
In R CMD INSTALL