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INSTALL report for philr on tokay1

This page was generated on 2019-04-13 11:27:03 -0400 (Sat, 13 Apr 2019).

Package 1153/1649HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
philr 1.8.1
Justin Silverman
Snapshot Date: 2019-04-12 17:01:30 -0400 (Fri, 12 Apr 2019)
URL: https://git.bioconductor.org/packages/philr
Branch: RELEASE_3_8
Last Commit: 0102369
Last Changed Date: 2019-01-04 13:44:06 -0400 (Fri, 04 Jan 2019)
malbec1 Linux (Ubuntu 16.04.6 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64 [ OK ] OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
merida1 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: philr
Version: 1.8.1
Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/philr_1.8.1.tar.gz && rm -rf philr.buildbin-libdir && mkdir philr.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=philr.buildbin-libdir philr_1.8.1.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL philr_1.8.1.zip && rm philr_1.8.1.tar.gz philr_1.8.1.zip
StartedAt: 2019-04-12 19:00:08 -0400 (Fri, 12 Apr 2019)
EndedAt: 2019-04-12 19:01:03 -0400 (Fri, 12 Apr 2019)
EllapsedTime: 54.6 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/philr_1.8.1.tar.gz && rm -rf philr.buildbin-libdir && mkdir philr.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=philr.buildbin-libdir philr_1.8.1.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL philr_1.8.1.zip && rm philr_1.8.1.tar.gz philr_1.8.1.zip
###
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install for i386

* installing *source* package 'philr' ...
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'philr'
    finding HTML links ... done
    annotate_balance                        html  
    buildilrBasep                           html  
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpkjcCos/R.INSTALL15001b694120/philr/man/buildilrBasep.Rd:33: file link 'gsi.buildilrBase' in package 'compositions' does not exist and so has been treated as a topic
    calculate.blw                           html  
    convert_to_long                         html  
    g.colMeans                              html  
    g.rowMeans                              html  
    mean_dist_to_tips                       html  
    miniclo                                 html  
    name.balance                            html  
    name_nodenumber_conversion              html  
    named_rtree                             html  
    philr                                   html  
    philrInv                                html  
    phylo2sbp                               html  
    shift                                   html  
    weighted_clr                            html  
    weighted_ilr                            html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'philr' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'philr' as philr_1.8.1.zip
* DONE (philr)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.8-bioc/R/library'
package 'philr' successfully unpacked and MD5 sums checked
In R CMD INSTALL