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INSTALL report for netbenchmark on tokay1

This page was generated on 2019-04-13 11:25:02 -0400 (Sat, 13 Apr 2019).

Package 1046/1649HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
netbenchmark 1.14.0
Pau Bellot
Snapshot Date: 2019-04-12 17:01:30 -0400 (Fri, 12 Apr 2019)
URL: https://git.bioconductor.org/packages/netbenchmark
Branch: RELEASE_3_8
Last Commit: cd81c69
Last Changed Date: 2018-10-30 11:41:57 -0400 (Tue, 30 Oct 2018)
malbec1 Linux (Ubuntu 16.04.6 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64 [ OK ] OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
merida1 OS X 10.11.6 El Capitan / x86_64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository

Summary

Package: netbenchmark
Version: 1.14.0
Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/netbenchmark_1.14.0.tar.gz && rm -rf netbenchmark.buildbin-libdir && mkdir netbenchmark.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=netbenchmark.buildbin-libdir netbenchmark_1.14.0.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL netbenchmark_1.14.0.zip && rm netbenchmark_1.14.0.tar.gz netbenchmark_1.14.0.zip
StartedAt: 2019-04-12 18:57:12 -0400 (Fri, 12 Apr 2019)
EndedAt: 2019-04-12 18:58:22 -0400 (Fri, 12 Apr 2019)
EllapsedTime: 70.1 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/netbenchmark_1.14.0.tar.gz && rm -rf netbenchmark.buildbin-libdir && mkdir netbenchmark.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=netbenchmark.buildbin-libdir netbenchmark_1.14.0.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL netbenchmark_1.14.0.zip && rm netbenchmark_1.14.0.tar.gz netbenchmark_1.14.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 34331  100 34331    0     0   845k      0 --:--:-- --:--:-- --:--:--  931k

install for i386

* installing *source* package 'netbenchmark' ...
** libs
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c netbenchmark_init.c -o netbenchmark_init.o
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c rate.cpp -o rate.o
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c zsc.cpp -o zsc.o
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o netbenchmark.dll tmp.def RcppExports.o netbenchmark_init.o rate.o zsc.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.8-bioc/meat/netbenchmark.buildbin-libdir/netbenchmark/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'netbenchmark'
    finding HTML links ... done
    GeneNet.wrap                            html  
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpcjjX3T/R.INSTALLf9c48c0a1b/netbenchmark/man/GeneNet.wrap.Rd:48: file link 'GeneNet-package' in package 'GeneNet' does not exist and so has been treated as a topic
    Genie3.wrap                             html  
    RegistrerWrapper                        html  
    aracne.wrap                             html  
    c3net.wrap                              html  
    clr.wrap                                html  
    comp.metr                               html  
    datasource.subsample                    html  
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpcjjX3T/R.INSTALLf9c48c0a1b/netbenchmark/man/datasource.subsample.Rd:35: file link 'set.seed' in package 'base' does not exist and so has been treated as a topic
    evaluate                                html  
    experiments.bench                       html  
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpcjjX3T/R.INSTALLf9c48c0a1b/netbenchmark/man/experiments.bench.Rd:48: file link 'set.seed' in package 'base' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpcjjX3T/R.INSTALLf9c48c0a1b/netbenchmark/man/experiments.bench.Rd:77: file link 'rnorm' in package 'stats' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpcjjX3T/R.INSTALLf9c48c0a1b/netbenchmark/man/experiments.bench.Rd:78: file link 'rlnorm' in package 'stats' does not exist and so has been treated as a topic
    mrnet.wrap                              html  
    mrnetb.wrap                             html  
    mutrank.wrap                            html  
    netbenchmark-package                    html  
    netbenchmark                            html  
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpcjjX3T/R.INSTALLf9c48c0a1b/netbenchmark/man/netbenchmark.Rd:40: file link 'set.seed' in package 'base' does not exist and so has been treated as a topic
    netbenchmark.data                       html  
    noise.bench                             html  
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpcjjX3T/R.INSTALLf9c48c0a1b/netbenchmark/man/noise.bench.Rd:46: file link 'set.seed' in package 'base' does not exist and so has been treated as a topic
    ntb_globals                             html  
    pcit.wrap                               html  
    rate                                    html  
    zsc                                     html  
    zscore.wrap                             html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'netbenchmark' ...
** libs
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c netbenchmark_init.c -o netbenchmark_init.o
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c rate.cpp -o rate.o
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c zsc.cpp -o zsc.o
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o netbenchmark.dll tmp.def RcppExports.o netbenchmark_init.o rate.o zsc.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.8-bioc/meat/netbenchmark.buildbin-libdir/netbenchmark/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'netbenchmark' as netbenchmark_1.14.0.zip
* DONE (netbenchmark)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.8-bioc/R/library'
package 'netbenchmark' successfully unpacked and MD5 sums checked
In R CMD INSTALL