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INSTALL report for VariantFiltering on malbec1

This page was generated on 2019-04-16 11:50:30 -0400 (Tue, 16 Apr 2019).

Package 1618/1649HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
VariantFiltering 1.18.0
Robert Castelo
Snapshot Date: 2019-04-15 17:01:12 -0400 (Mon, 15 Apr 2019)
URL: https://git.bioconductor.org/packages/VariantFiltering
Branch: RELEASE_3_8
Last Commit: e217023
Last Changed Date: 2018-10-30 11:41:53 -0400 (Tue, 30 Oct 2018)
malbec1 Linux (Ubuntu 16.04.6 LTS) / x86_64 [ OK ] OK  OK UNNEEDED, same version exists in internal repository
merida1 OS X 10.11.6 El Capitan / x86_64  OK  ERROR  skipped  skipped 

Summary

Package: VariantFiltering
Version: 1.18.0
Command: /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD INSTALL VariantFiltering
StartedAt: 2019-04-15 18:29:38 -0400 (Mon, 15 Apr 2019)
EndedAt: 2019-04-15 18:30:18 -0400 (Mon, 15 Apr 2019)
EllapsedTime: 39.8 seconds
RetCode: 0
Status:  OK 

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD INSTALL VariantFiltering
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* installing to library ‘/home/biocbuild/bbs-3.8-bioc/R/library’
* installing *source* package ‘VariantFiltering’ ...
** libs
gcc -I"/home/biocbuild/bbs-3.8-bioc/R/include" -DNDEBUG  -I"/home/biocbuild/bbs-3.8-bioc/R/library/S4Vectors/include" -I"/home/biocbuild/bbs-3.8-bioc/R/library/IRanges/include" -I"/home/biocbuild/bbs-3.8-bioc/R/library/XVector/include" -I"/home/biocbuild/bbs-3.8-bioc/R/library/Biostrings/include" -I/usr/local/include   -fpic  -g -O2  -Wall -c Biostrings_stubs.c -o Biostrings_stubs.o
gcc -I"/home/biocbuild/bbs-3.8-bioc/R/include" -DNDEBUG  -I"/home/biocbuild/bbs-3.8-bioc/R/library/S4Vectors/include" -I"/home/biocbuild/bbs-3.8-bioc/R/library/IRanges/include" -I"/home/biocbuild/bbs-3.8-bioc/R/library/XVector/include" -I"/home/biocbuild/bbs-3.8-bioc/R/library/Biostrings/include" -I/usr/local/include   -fpic  -g -O2  -Wall -c R_init_VariantFiltering.c -o R_init_VariantFiltering.o
gcc -I"/home/biocbuild/bbs-3.8-bioc/R/include" -DNDEBUG  -I"/home/biocbuild/bbs-3.8-bioc/R/library/S4Vectors/include" -I"/home/biocbuild/bbs-3.8-bioc/R/library/IRanges/include" -I"/home/biocbuild/bbs-3.8-bioc/R/library/XVector/include" -I"/home/biocbuild/bbs-3.8-bioc/R/library/Biostrings/include" -I/usr/local/include   -fpic  -g -O2  -Wall -c methods-WeightMatrix.c -o methods-WeightMatrix.o
gcc -shared -L/home/biocbuild/bbs-3.8-bioc/R/lib -L/usr/local/lib -o VariantFiltering.so Biostrings_stubs.o R_init_VariantFiltering.o methods-WeightMatrix.o -L/home/biocbuild/bbs-3.8-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.8-bioc/R/library/VariantFiltering/libs
** R
** inst
** byte-compile and prepare package for lazy loading
in method for 'annotateVariants' with signature 'annObj="MafDb"': no definition for class "MafDb"
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (VariantFiltering)