Back to Multiple platform build/check report for BioC 3.8
ABCDEFGHIJKLMNOPQR[S]TUVWXYZ

INSTALL report for SIAMCAT on tokay1

This page was generated on 2019-04-13 11:29:19 -0400 (Sat, 13 Apr 2019).

Package 1436/1649HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
SIAMCAT 1.2.1
Konrad Zych
Snapshot Date: 2019-04-12 17:01:30 -0400 (Fri, 12 Apr 2019)
URL: https://git.bioconductor.org/packages/SIAMCAT
Branch: RELEASE_3_8
Last Commit: 4f0a7ca
Last Changed Date: 2019-01-04 13:50:25 -0400 (Fri, 04 Jan 2019)
malbec1 Linux (Ubuntu 16.04.6 LTS) / x86_64  OK  OK  NA 
tokay1 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
merida1 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: SIAMCAT
Version: 1.2.1
Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/SIAMCAT_1.2.1.tar.gz && rm -rf SIAMCAT.buildbin-libdir && mkdir SIAMCAT.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SIAMCAT.buildbin-libdir SIAMCAT_1.2.1.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL SIAMCAT_1.2.1.zip && rm SIAMCAT_1.2.1.tar.gz SIAMCAT_1.2.1.zip
StartedAt: 2019-04-12 19:23:21 -0400 (Fri, 12 Apr 2019)
EndedAt: 2019-04-12 19:26:05 -0400 (Fri, 12 Apr 2019)
EllapsedTime: 164.6 seconds
RetCode: 0
Status:  OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/SIAMCAT_1.2.1.tar.gz && rm -rf SIAMCAT.buildbin-libdir && mkdir SIAMCAT.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SIAMCAT.buildbin-libdir SIAMCAT_1.2.1.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL SIAMCAT_1.2.1.zip && rm SIAMCAT_1.2.1.tar.gz SIAMCAT_1.2.1.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
 65 4073k   65 2672k    0     0  27.6M      0 --:--:-- --:--:-- --:--:-- 28.3M
100 4073k  100 4073k    0     0  27.7M      0 --:--:-- --:--:-- --:--:-- 28.2M

install for i386

* installing *source* package 'SIAMCAT' ...
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'SIAMCAT'
    finding HTML links ... done
    SIAMCAT-package                         html  
    accessSlot                              html  
    add.meta.pred                           html  
    assign-associations                     html  
    assign-data_split                       html  
    assign-eval_data                        html  
    assign-filt_feat                        html  
    assign-label                            html  
    assign-meta                             html  
    assign-model_list                       html  
    assign-norm_feat                        html  
    assign-orig_feat                        html  
    assign-physeq                           html  
    assign-pred_matrix                      html  
    assoc_param-methods                     html  
    associations-class                      html  
    associations-methods                    html  
    check.associations                      html  
    check.confounders                       html  
    create.data.split                       html  
    create.label                            html  
    data_split-class                        html  
    data_split-methods                      html  
    eval_data-class                         html  
    eval_data-methods                       html  
    evaluate.predictions                    html  
    feat.crc.zeller                         html  
    feature_type-methods                    html  
    feature_weights-methods                 html  
    filt_feat-class                         html  
    filt_feat-methods                       html  
    filt_params-methods                     html  
    filter.features                         html  
    filter.label                            html  
    get.component.classes                   html  
    get.filt_feat.matrix                    html  
    get.norm_feat.matrix                    html  
    get.orig_feat.matrix                    html  
    label-class                             html  
    label-methods                           html  
    make.predictions                        html  
    meta-methods                            html  
    meta.crc.zeller                         html  
    model.evaluation.plot                   html  
    model.interpretation.plot               html  
    model_list-class                        html  
    model_list-methods                      html  
    model_type-methods                      html  
    models-methods                          html  
    norm_feat-class                         html  
    norm_feat-methods                       html  
    norm_params-methods                     html  
    normalize.features                      html  
    orig_feat-methods                       html  
    parse.label.header                      html  
    physeq-methods                          html  
    pred_matrix-class                       html  
    pred_matrix-methods                     html  
    read.label                              html  
    read.lefse                              html  
    select.samples                          html  
    show-methods                            html  
    siamcat-class                           html  
    siamcat                                 html  
    siamcat.to.lefse                        html  
    siamcat.to.maaslin                      html  
    siamcat_example                         html  
    summarize.features                      html  
    train.model                             html  
    validate.data                           html  
    weight_matrix-methods                   html  
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'SIAMCAT' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'SIAMCAT' as SIAMCAT_1.2.1.zip
* DONE (SIAMCAT)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.8-bioc/R/library'
package 'SIAMCAT' successfully unpacked and MD5 sums checked
In R CMD INSTALL