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INSTALL report for QUALIFIER on tokay1

This page was generated on 2019-04-13 11:22:03 -0400 (Sat, 13 Apr 2019).

Package 1229/1649HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
QUALIFIER 1.26.1
Mike Jiang
Snapshot Date: 2019-04-12 17:01:30 -0400 (Fri, 12 Apr 2019)
URL: https://git.bioconductor.org/packages/QUALIFIER
Branch: RELEASE_3_8
Last Commit: 3c4dd17
Last Changed Date: 2019-01-04 13:46:14 -0400 (Fri, 04 Jan 2019)
malbec1 Linux (Ubuntu 16.04.6 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64 [ OK ] OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
merida1 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: QUALIFIER
Version: 1.26.1
Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/QUALIFIER_1.26.1.tar.gz && rm -rf QUALIFIER.buildbin-libdir && mkdir QUALIFIER.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=QUALIFIER.buildbin-libdir QUALIFIER_1.26.1.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL QUALIFIER_1.26.1.zip && rm QUALIFIER_1.26.1.tar.gz QUALIFIER_1.26.1.zip
StartedAt: 2019-04-12 19:38:10 -0400 (Fri, 12 Apr 2019)
EndedAt: 2019-04-12 19:39:07 -0400 (Fri, 12 Apr 2019)
EllapsedTime: 56.6 seconds
RetCode: 0
Status:  OK  

Command output

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### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/QUALIFIER_1.26.1.tar.gz && rm -rf QUALIFIER.buildbin-libdir && mkdir QUALIFIER.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=QUALIFIER.buildbin-libdir QUALIFIER_1.26.1.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL QUALIFIER_1.26.1.zip && rm QUALIFIER_1.26.1.tar.gz QUALIFIER_1.26.1.zip
###
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install for i386

* installing *source* package 'QUALIFIER' ...
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'QUALIFIER'
    finding HTML links ... done
    ITNQASTUDY                              html  
    QUALIFIER-package                       html  
    getQAStats                              html  
    finding level-2 HTML links ... done

    initDB                                  html  
    outlierFunctions                        html  
    plot-methods                            html  
    qaCheck-methods                         html  
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/Rtmp6ftFX7/R.INSTALL18b411cc774c/QUALIFIER/man/qaCheck-methods.Rd:40: file link 'plot' in package 'QUALIFIER' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/Rtmp6ftFX7/R.INSTALL18b411cc774c/QUALIFIER/man/qaCheck-methods.Rd:131: file link 'plot' in package 'QUALIFIER' does not exist and so has been treated as a topic
    qaPreprocess                            html  
    qaReport                                html  
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/Rtmp6ftFX7/R.INSTALL18b411cc774c/QUALIFIER/man/qaReport.Rd:20: file link 'plot' in package 'QUALIFIER' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/Rtmp6ftFX7/R.INSTALL18b411cc774c/QUALIFIER/man/qaReport.Rd:63: file link 'plot' in package 'QUALIFIER' does not exist and so has been treated as a topic
    qaTask-class                            html  
    read.qaTask                             html  
    saveToDB                                html  
    save_db                                 html  
** building package indices
** installing vignettes
   'QUALIFIER.Rmd' 
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'QUALIFIER' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'QUALIFIER' as QUALIFIER_1.26.1.zip
* DONE (QUALIFIER)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.8-bioc/R/library'
package 'QUALIFIER' successfully unpacked and MD5 sums checked
In R CMD INSTALL