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INSTALL report for Pigengene on tokay1

This page was generated on 2019-04-13 11:26:45 -0400 (Sat, 13 Apr 2019).

Package 1160/1649HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
Pigengene 1.8.1
Habil Zare
Snapshot Date: 2019-04-12 17:01:30 -0400 (Fri, 12 Apr 2019)
URL: https://git.bioconductor.org/packages/Pigengene
Branch: RELEASE_3_8
Last Commit: 59ee84d
Last Changed Date: 2019-01-04 13:06:36 -0400 (Fri, 04 Jan 2019)
malbec1 Linux (Ubuntu 16.04.6 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64 [ OK ] OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
merida1 OS X 10.11.6 El Capitan / x86_64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository

Summary

Package: Pigengene
Version: 1.8.1
Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/Pigengene_1.8.1.tar.gz && rm -rf Pigengene.buildbin-libdir && mkdir Pigengene.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=Pigengene.buildbin-libdir Pigengene_1.8.1.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL Pigengene_1.8.1.zip && rm Pigengene_1.8.1.tar.gz Pigengene_1.8.1.zip
StartedAt: 2019-04-12 19:28:18 -0400 (Fri, 12 Apr 2019)
EndedAt: 2019-04-12 19:30:10 -0400 (Fri, 12 Apr 2019)
EllapsedTime: 111.7 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/Pigengene_1.8.1.tar.gz && rm -rf Pigengene.buildbin-libdir && mkdir Pigengene.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=Pigengene.buildbin-libdir Pigengene_1.8.1.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL Pigengene_1.8.1.zip && rm Pigengene_1.8.1.tar.gz Pigengene_1.8.1.zip
###
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100 2455k  100 2455k    0     0  39.9M      0 --:--:-- --:--:-- --:--:-- 42.8M

install for i386

* installing *source* package 'Pigengene' ...
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'Pigengene'
    finding HTML links ... done
    Pigengene-package                       html  
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/Rtmpmaunpv/R.INSTALLe445d3923ca/Pigengene/man/Pigengene-package.Rd:55: missing file link 'WGCNA-package'
    aml                                     html  
    balance                                 html  
    calculate.beta                          html  
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/Rtmpmaunpv/R.INSTALLe445d3923ca/Pigengene/man/calculate.beta.Rd:8: missing file link 'WGCNA-package'
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/Rtmpmaunpv/R.INSTALLe445d3923ca/Pigengene/man/calculate.beta.Rd:58: missing file link 'WGCNA-package'
    check.nas                               html  
    check.pigengene.input                   html  
    compact.tree                            html  
    compute.pigengene                       html  
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/Rtmpmaunpv/R.INSTALLe445d3923ca/Pigengene/man/compute.pigengene.Rd:74: missing file link 'WGCNA-package'
    dcor.matrix                             html  
    draw.bn                                 html  
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/Rtmpmaunpv/R.INSTALLe445d3923ca/Pigengene/man/draw.bn.Rd:18: file link 'bn-class' in package 'bnlearn' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/Rtmpmaunpv/R.INSTALLe445d3923ca/Pigengene/man/draw.bn.Rd:67: file link 'bn-class' in package 'bnlearn' does not exist and so has been treated as a topic
    eigengenes33                            html  
    gene.mapping                            html  
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/Rtmpmaunpv/R.INSTALLe445d3923ca/Pigengene/man/gene.mapping.Rd:60: file link 'org.Hs.eg.db' in package 'org.Hs.eg.db' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/Rtmpmaunpv/R.INSTALLe445d3923ca/Pigengene/man/gene.mapping.Rd:61: file link 'org.Mm.eg.db' in package 'org.Mm.eg.db' does not exist and so has been treated as a topic
    get.fitted.leaf                         html  
    get.genes                               html  
    get.used.features                       html  
    learn.bn                                html  
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/Rtmpmaunpv/R.INSTALLe445d3923ca/Pigengene/man/learn.bn.Rd:99: file link 'discretize' in package 'bnlearn' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/Rtmpmaunpv/R.INSTALLe445d3923ca/Pigengene/man/learn.bn.Rd:104: file link 'bn-class' in package 'bnlearn' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/Rtmpmaunpv/R.INSTALLe445d3923ca/Pigengene/man/learn.bn.Rd:177: file link 'bn-class' in package 'bnlearn' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/Rtmpmaunpv/R.INSTALLe445d3923ca/Pigengene/man/learn.bn.Rd:202: missing file link 'WGCNA-package'
    make.decision.tree                      html  
    mds                                     html  
    module.heatmap                          html  
    one.step.pigengene                      html  
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/Rtmpmaunpv/R.INSTALLe445d3923ca/Pigengene/man/one.step.pigengene.Rd:154: missing file link 'WGCNA-package'
    pheatmap.type                           html  
    pigengene-class                         html  
    pigengene                               html  
    plot.pigengene                          html  
    preds.at                                html  
    project.eigen                           html  
    pvalues.manova                          html  
    wgcna.one.step                          html  
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/Rtmpmaunpv/R.INSTALLe445d3923ca/Pigengene/man/wgcna.one.step.Rd:83: missing file link 'WGCNA-package'
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'Pigengene' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'Pigengene' as Pigengene_1.8.1.zip
* DONE (Pigengene)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.8-bioc/R/library'
package 'Pigengene' successfully unpacked and MD5 sums checked
In R CMD INSTALL