Package: PepsNMR

Version: 1.0.2

Command: /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD check --install=check:PepsNMR.install-out.txt --library=/home/biocbuild/bbs-3.8-bioc/R/library --no-vignettes --timings PepsNMR_1.0.2.tar.gz

StartedAt: 2019-04-16 02:02:42 -0400 (Tue, 16 Apr 2019)

EndedAt: 2019-04-16 02:06:10 -0400 (Tue, 16 Apr 2019)

EllapsedTime: 208.2 seconds

RetCode: 0

Status:  OK

CheckDir: PepsNMR.Rcheck

Warnings: 0

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### Running command:
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###   /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD check --install=check:PepsNMR.install-out.txt --library=/home/biocbuild/bbs-3.8-bioc/R/library --no-vignettes --timings PepsNMR_1.0.2.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.8-bioc/meat/PepsNMR.Rcheck’
* using R version 3.5.3 (2019-03-11)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘PepsNMR/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘PepsNMR’ version ‘1.0.2’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘PepsNMR’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
                     user system elapsed
PEPSNMR-package    70.728  0.692  71.970
PreprocessingChain 67.152  0.120  67.352
Warping            10.404  0.012  10.422
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

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### Running command:
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###   /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD INSTALL PepsNMR
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* installing to library ‘/home/biocbuild/bbs-3.8-bioc/R/library’
* installing *source* package ‘PepsNMR’ ...
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (PepsNMR)

name	user	system	elapsed
Apodization	0.816	0.032	1.007
BaselineCorrection	0.552	0.008	0.563
Bucketing	0.064	0.000	0.064
Draw	1.452	0.000	1.456
DrawPCA	0.66	0.00	0.66
DrawSignal	0.692	0.004	0.696
FirstOrderPhaseCorrection	0.040	0.000	0.039
FourierTransform	0.032	0.000	0.032
GroupDelayCorrection	0.040	0.004	0.046
InternalReferencing	0.028	0.004	0.029
NegativeValuesZeroing	0.012	0.000	0.010
Normalization	0.008	0.000	0.008
PEPSNMR-package	70.728	0.692	71.970
PreprocessingChain	67.152	0.120	67.352
ReadFids	0.220	0.000	0.217
RegionRemoval	0.008	0.000	0.011
SolventSuppression	0.112	0.008	0.121
Warping	10.404	0.012	10.422
WindowSelection	0.024	0.000	0.026
ZeroOrderPhaseCorrection	0.072	0.000	0.073
ZoneAggregation	0.408	0.008	0.655