Package: Harshlight

Version: 1.54.0

Command: /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD INSTALL Harshlight

StartedAt: 2019-04-15 18:07:58 -0400 (Mon, 15 Apr 2019)

EndedAt: 2019-04-15 18:08:06 -0400 (Mon, 15 Apr 2019)

EllapsedTime: 8.5 seconds

RetCode: 0

Status:  OK

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD INSTALL Harshlight
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.8-bioc/R/library’
* installing *source* package ‘Harshlight’ ...
** libs
gcc -I"/home/biocbuild/bbs-3.8-bioc/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -Wall -c Harshlight.c -o Harshlight.o
Harshlight.c: In function ‘extended_defects’:
Harshlight.c:564:20: warning: variable ‘p_num_points’ set but not used [-Wunused-but-set-variable]
   int num_points, *p_num_points; //number of points inside the median kernel
                    ^
Harshlight.c: In function ‘image_dilation’:
Harshlight.c:948:10: warning: variable ‘cell_value’ set but not used [-Wunused-but-set-variable]
   double cell_value;
          ^
Harshlight.c: In function ‘norm’:
Harshlight.c:1316:27: warning: unused variable ‘sorted2’ [-Wunused-variable]
   double *sorted; double *sorted2;
                           ^
Harshlight.c: In function ‘report_overall_header’:
Harshlight.c:1471:6: warning: unknown conversion type character ‘)’ in format [-Wformat=]
   PP "%d %d moveto (%.2f%) show\n", x_text_val, y_text - 215, *diff_br);
      ^
Harshlight.c:1474:6: warning: unknown conversion type character ‘)’ in format [-Wformat=]
   PP "%d %d moveto (%.2f%) show\n", x_text_val, y_text - 230, *diff_dr);
      ^
Harshlight.c: In function ‘chip_summary’:
Harshlight.c:1532:6: warning: unknown conversion type character ‘)’ in format [-Wformat=]
   PP "%d %d moveto (Extended defects: the variance of the Error Image explained by the background is %.2f%) show\n", x_text, y_text - 30, *var);
      ^
Harshlight.c:1542:6: warning: unknown conversion type character ‘)’ in format [-Wformat=]
   PP "%d %d moveto (%.2f%) show\n", x_val_1, y_text - 100, *perc_c);
      ^
Harshlight.c:1543:6: warning: unknown conversion type character ‘)’ in format [-Wformat=]
   PP "%d %d moveto (%.2f%) show\n", x_val_2, y_text - 100, *perc_d);
      ^
Harshlight.c: In function ‘extended_stop’:
Harshlight.c:1555:6: warning: unknown conversion type character ‘)’ in format [-Wformat=]
   PP "%d %d moveto (Extended defects: the variance of the Error Image explained by the background is %.2f%) show\n", x_text, y_text - 30, *var);
      ^
gcc -shared -L/home/biocbuild/bbs-3.8-bioc/R/lib -L/usr/local/lib -o Harshlight.so Harshlight.o -L/home/biocbuild/bbs-3.8-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.8-bioc/R/library/Harshlight/libs
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (Harshlight)