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INSTALL report for GeneSelector on tokay1

This page was generated on 2019-04-13 11:20:40 -0400 (Sat, 13 Apr 2019).

Package 608/1649HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
GeneSelector 2.32.0
Martin Slawski
Snapshot Date: 2019-04-12 17:01:30 -0400 (Fri, 12 Apr 2019)
URL: https://git.bioconductor.org/packages/GeneSelector
Branch: RELEASE_3_8
Last Commit: 72c2f53
Last Changed Date: 2018-10-30 11:41:44 -0400 (Tue, 30 Oct 2018)
malbec1 Linux (Ubuntu 16.04.6 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64 [ OK ] OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
merida1 OS X 10.11.6 El Capitan / x86_64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository

Summary

Package: GeneSelector
Version: 2.32.0
Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/GeneSelector_2.32.0.tar.gz && rm -rf GeneSelector.buildbin-libdir && mkdir GeneSelector.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GeneSelector.buildbin-libdir GeneSelector_2.32.0.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL GeneSelector_2.32.0.zip && rm GeneSelector_2.32.0.tar.gz GeneSelector_2.32.0.zip
StartedAt: 2019-04-12 18:46:57 -0400 (Fri, 12 Apr 2019)
EndedAt: 2019-04-12 18:49:09 -0400 (Fri, 12 Apr 2019)
EllapsedTime: 131.9 seconds
RetCode: 0
Status:  OK  

Command output

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### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/GeneSelector_2.32.0.tar.gz && rm -rf GeneSelector.buildbin-libdir && mkdir GeneSelector.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GeneSelector.buildbin-libdir GeneSelector_2.32.0.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL GeneSelector_2.32.0.zip && rm GeneSelector_2.32.0.tar.gz GeneSelector_2.32.0.zip
###
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install for i386

* installing *source* package 'GeneSelector' ...
** libs
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c kendall.c -o kendall.o
kendall.c: In function 'kendall':
kendall.c:6:14: warning: 'tau' may be used uninitialized in this function [-Wmaybe-uninitialized]
          tau = tau + w[i] * w[j] * (((r[i] - r[j]) * (rprime[i] - rprime[j])) < 0); 
              ^
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c mcfour.c -o mcfour.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c mct.c -o mct.o
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o GeneSelector.dll tmp.def kendall.o mcfour.o mct.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.8-bioc/meat/GeneSelector.buildbin-libdir/GeneSelector/libs/i386
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'GeneSelector'
    finding HTML links ... done
    AggregateMC                             html  
    AggregatePenalty                        html  
    AggregateSVD                            html  
    AggregateSimple                         html  
    AggregatedRanking-class                 html  
    BootMatrix-class                        html  
    FoldMatrix-class                        html  
    GeneRanking-class                       html  
    GeneSelector-package                    html  
    GeneSelector                            html  
    GeneSelectorOutput-class                html  
    GenerateBootMatrix                      html  
    GenerateFoldMatrix                      html  
    GetStabilityDistance                    html  
    GetStabilityOverlap                     html  
    GetStabilityUnion                       html  
    HeatmapRankings                         html  
    MergeMethods                            html  
    RankingBaldiLong                        html  
    RankingEbam                             html  
    RankingFC                               html  
    RankingFoxDimmic                        html  
    RankingLimma                            html  
    RankingPermutation                      html  
    RankingSam                              html  
    RankingShrinkageT                       html  
    RankingSoftthresholdT                   html  
    RankingTstat                            html  
    RankingWelchT                           html  
    RankingWilcEbam                         html  
    RankingWilcoxon                         html  
    RepeatRanking                           html  
    RepeatedRanking-class                   html  
    StabilityDistance-class                 html  
    StabilityOverlap-class                  html  
    StabilityUnion-class                    html  
    dispersion,RepeatedRanking              html  
    internals                               html  
    samplingcontrol                         html  
    toplist-methods                         html  
    toydata                                 html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
Warning: Package 'GeneSelector' is deprecated and will be removed from
  Bioconductor version 3.9
In R CMD INSTALL

install for x64

* installing *source* package 'GeneSelector' ...
** libs
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c kendall.c -o kendall.o
kendall.c: In function 'kendall':
kendall.c:6:14: warning: 'tau' may be used uninitialized in this function [-Wmaybe-uninitialized]
          tau = tau + w[i] * w[j] * (((r[i] - r[j]) * (rprime[i] - rprime[j])) < 0); 
              ^
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c mcfour.c -o mcfour.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c mct.c -o mct.o
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o GeneSelector.dll tmp.def kendall.o mcfour.o mct.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.8-bioc/meat/GeneSelector.buildbin-libdir/GeneSelector/libs/x64
** testing if installed package can be loaded
Warning: Package 'GeneSelector' is deprecated and will be removed from
  Bioconductor version 3.9
* MD5 sums
packaged installation of 'GeneSelector' as GeneSelector_2.32.0.zip
* DONE (GeneSelector)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.8-bioc/R/library'
package 'GeneSelector' successfully unpacked and MD5 sums checked
In R CMD INSTALL