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INSTALL report for DirichletMultinomial on tokay1

This page was generated on 2019-04-13 11:22:10 -0400 (Sat, 13 Apr 2019).

Package 416/1649HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
DirichletMultinomial 1.24.1
Martin Morgan
Snapshot Date: 2019-04-12 17:01:30 -0400 (Fri, 12 Apr 2019)
URL: https://git.bioconductor.org/packages/DirichletMultinomial
Branch: RELEASE_3_8
Last Commit: 50195d9
Last Changed Date: 2019-01-04 13:29:45 -0400 (Fri, 04 Jan 2019)
malbec1 Linux (Ubuntu 16.04.6 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
merida1 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: DirichletMultinomial
Version: 1.24.1
Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/DirichletMultinomial_1.24.1.tar.gz && rm -rf DirichletMultinomial.buildbin-libdir && mkdir DirichletMultinomial.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=DirichletMultinomial.buildbin-libdir DirichletMultinomial_1.24.1.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL DirichletMultinomial_1.24.1.zip && rm DirichletMultinomial_1.24.1.tar.gz DirichletMultinomial_1.24.1.zip
StartedAt: 2019-04-12 18:33:16 -0400 (Fri, 12 Apr 2019)
EndedAt: 2019-04-12 18:34:44 -0400 (Fri, 12 Apr 2019)
EllapsedTime: 88.2 seconds
RetCode: 0
Status:  OK  

Command output

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### Running command:
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###   C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/DirichletMultinomial_1.24.1.tar.gz && rm -rf DirichletMultinomial.buildbin-libdir && mkdir DirichletMultinomial.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=DirichletMultinomial.buildbin-libdir DirichletMultinomial_1.24.1.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL DirichletMultinomial_1.24.1.zip && rm DirichletMultinomial_1.24.1.tar.gz DirichletMultinomial_1.24.1.zip
###
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install for i386

* installing *source* package 'DirichletMultinomial' ...
** libs
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG -I/src/include -I/i386/include    -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c R_init_DirichletMultinomial.c -o R_init_DirichletMultinomial.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG -I/src/include -I/i386/include    -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c dirichlet_fit.c -o dirichlet_fit.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG -I/src/include -I/i386/include    -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c dirichlet_fit_main.c -o dirichlet_fit_main.o
dirichlet_fit_main.c: In function 'dirichlet_fit_main':
dirichlet_fit_main.c:542:17: warning: variable 'status' set but not used [-Wunused-but-set-variable]
     int signum, status;
                 ^
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o DirichletMultinomial.dll tmp.def R_init_DirichletMultinomial.o dirichlet_fit.o dirichlet_fit_main.o -L/i386/lib -lgsl -lgslcblas -lm -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.8-bioc/meat/DirichletMultinomial.buildbin-libdir/DirichletMultinomial/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'DirichletMultinomial'
    finding HTML links ... done
    DMN-class                               html  
    DMNGroup-class                          html  
    finding level-2 HTML links ... done

    DirichletMultinomial-package            html  
    cvdmngroup                              html  
    dataobjects                             html  
    dmn                                     html  
    dmngroup                                html  
    fitted                                  html  
    heatmapdmn                              html  
    roc                                     html  
    util                                    html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'DirichletMultinomial' ...
** libs
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG -I/src/include -I/x64/include    -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c R_init_DirichletMultinomial.c -o R_init_DirichletMultinomial.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG -I/src/include -I/x64/include    -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c dirichlet_fit.c -o dirichlet_fit.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG -I/src/include -I/x64/include    -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c dirichlet_fit_main.c -o dirichlet_fit_main.o
dirichlet_fit_main.c: In function 'dirichlet_fit_main':
dirichlet_fit_main.c:542:17: warning: variable 'status' set but not used [-Wunused-but-set-variable]
     int signum, status;
                 ^
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o DirichletMultinomial.dll tmp.def R_init_DirichletMultinomial.o dirichlet_fit.o dirichlet_fit_main.o -L/x64/lib -lgsl -lgslcblas -lm -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.8-bioc/meat/DirichletMultinomial.buildbin-libdir/DirichletMultinomial/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'DirichletMultinomial' as DirichletMultinomial_1.24.1.zip
* DONE (DirichletMultinomial)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.8-bioc/R/library'
package 'DirichletMultinomial' successfully unpacked and MD5 sums checked
In R CMD INSTALL