Back to Multiple platform build/check report for BioC 3.8
ABC[D]EFGHIJKLMNOPQRSTUVWXYZ

BUILD BIN report for DelayedArray on tokay1

This page was generated on 2019-04-13 11:27:21 -0400 (Sat, 13 Apr 2019).

Package 388/1649HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
DelayedArray 0.8.0
Hervé Pagès
Snapshot Date: 2019-04-12 17:01:30 -0400 (Fri, 12 Apr 2019)
URL: https://git.bioconductor.org/packages/DelayedArray
Branch: RELEASE_3_8
Last Commit: 7c23cf4
Last Changed Date: 2018-10-30 13:55:54 -0400 (Tue, 30 Oct 2018)
malbec1 Linux (Ubuntu 16.04.6 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64  OK  OK  WARNINGS [ OK ]UNNEEDED, same version exists in internal repository
merida1 OS X 10.11.6 El Capitan / x86_64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository

Summary

Package: DelayedArray
Version: 0.8.0
Command: rm -rf DelayedArray.buildbin-libdir && mkdir DelayedArray.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=DelayedArray.buildbin-libdir DelayedArray_0.8.0.tar.gz
StartedAt: 2019-04-13 07:09:38 -0400 (Sat, 13 Apr 2019)
EndedAt: 2019-04-13 07:10:20 -0400 (Sat, 13 Apr 2019)
EllapsedTime: 41.3 seconds
RetCode: 0
Status:  OK  
PackageFile: DelayedArray_0.8.0.zip
PackageFileSize: 1.547 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf DelayedArray.buildbin-libdir && mkdir DelayedArray.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=DelayedArray.buildbin-libdir DelayedArray_0.8.0.tar.gz
###
##############################################################################
##############################################################################



install for i386

* installing *source* package 'DelayedArray' ...
** libs
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/S4Vectors/include"   -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c R_init_DelayedArray.c -o R_init_DelayedArray.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/S4Vectors/include"   -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c S4Vectors_stubs.c -o S4Vectors_stubs.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/S4Vectors/include"   -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c abind.c -o abind.o
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o DelayedArray.dll tmp.def R_init_DelayedArray.o S4Vectors_stubs.o abind.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.8-bioc/meat/DelayedArray.buildbin-libdir/DelayedArray/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
Creating a new generic function for 'aperm' in package 'DelayedArray'
in method for 'coerce' with signature '"dgCMatrix","SparseArraySeed"': no definition for class "dgCMatrix"
in method for 'coerce' with signature '"SparseArraySeed","dgCMatrix"': no definition for class "dgCMatrix"
in method for 'coerce' with signature '"SparseArraySeed","sparseMatrix"': no definition for class "sparseMatrix"
in method for 'coerce' with signature '"DelayedMatrix","dgCMatrix"': no definition for class "dgCMatrix"
in method for 'coerce' with signature '"DelayedMatrix","sparseMatrix"': no definition for class "sparseMatrix"
Creating a generic function for 'sweep' from package 'base' in package 'DelayedArray'
Creating a new generic function for 'apply' in package 'DelayedArray'
Creating a generic function for 'dnorm' from package 'stats' in package 'DelayedArray'
Creating a generic function for 'pnorm' from package 'stats' in package 'DelayedArray'
Creating a generic function for 'qnorm' from package 'stats' in package 'DelayedArray'
Creating a generic function for 'dbinom' from package 'stats' in package 'DelayedArray'
Creating a generic function for 'pbinom' from package 'stats' in package 'DelayedArray'
Creating a generic function for 'qbinom' from package 'stats' in package 'DelayedArray'
Creating a generic function for 'dpois' from package 'stats' in package 'DelayedArray'
Creating a generic function for 'ppois' from package 'stats' in package 'DelayedArray'
Creating a generic function for 'qpois' from package 'stats' in package 'DelayedArray'
Creating a generic function for 'dlogis' from package 'stats' in package 'DelayedArray'
Creating a generic function for 'plogis' from package 'stats' in package 'DelayedArray'
Creating a generic function for 'qlogis' from package 'stats' in package 'DelayedArray'
Creating a new generic function for 'rowMaxs' in package 'DelayedArray'
Creating a new generic function for 'colMaxs' in package 'DelayedArray'
Creating a new generic function for 'rowMins' in package 'DelayedArray'
Creating a new generic function for 'colMins' in package 'DelayedArray'
Creating a new generic function for 'rowRanges' in package 'DelayedArray'
Creating a new generic function for 'colRanges' in package 'DelayedArray'
** help
*** installing help indices
  converting help for package 'DelayedArray'
    finding HTML links ... done
    Array-class                             html  
    ArrayGrid-class                         html  
    DelayedArray-class                      html  
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpEthjJK/R.INSTALL273c28eb57e/DelayedArray/man/DelayedArray-class.Rd:113: file link 'HDF5Array' in package 'HDF5Array' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpEthjJK/R.INSTALL273c28eb57e/DelayedArray/man/DelayedArray-class.Rd:210: file link 'HDF5Array' in package 'HDF5Array' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpEthjJK/R.INSTALL273c28eb57e/DelayedArray/man/DelayedArray-class.Rd:212: file link 'DataFrame' in package 'S4Vectors' does not exist and so has been treated as a topic
    DelayedArray-stats                      html  
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpEthjJK/R.INSTALL273c28eb57e/DelayedArray/man/DelayedArray-stats.Rd:72: file link 'dnorm' in package 'stats' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpEthjJK/R.INSTALL273c28eb57e/DelayedArray/man/DelayedArray-stats.Rd:72: file link 'dbinom' in package 'stats' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpEthjJK/R.INSTALL273c28eb57e/DelayedArray/man/DelayedArray-stats.Rd:73: file link 'dpois' in package 'stats' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpEthjJK/R.INSTALL273c28eb57e/DelayedArray/man/DelayedArray-stats.Rd:73: file link 'dlogis' in package 'stats' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpEthjJK/R.INSTALL273c28eb57e/DelayedArray/man/DelayedArray-stats.Rd:80: file link 'dnorm' in package 'stats' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpEthjJK/R.INSTALL273c28eb57e/DelayedArray/man/DelayedArray-stats.Rd:80: file link 'dbinom' in package 'stats' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpEthjJK/R.INSTALL273c28eb57e/DelayedArray/man/DelayedArray-stats.Rd:81: file link 'dpois' in package 'stats' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpEthjJK/R.INSTALL273c28eb57e/DelayedArray/man/DelayedArray-stats.Rd:81: file link 'dlogis' in package 'stats' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpEthjJK/R.INSTALL273c28eb57e/DelayedArray/man/DelayedArray-stats.Rd:90: file link 'HDF5Array' in package 'HDF5Array' does not exist and so has been treated as a topic
    DelayedArray-utils                      html  
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpEthjJK/R.INSTALL273c28eb57e/DelayedArray/man/DelayedArray-utils.Rd:92: file link 'Ops' in package 'methods' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpEthjJK/R.INSTALL273c28eb57e/DelayedArray/man/DelayedArray-utils.Rd:93: file link 'Math' in package 'methods' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpEthjJK/R.INSTALL273c28eb57e/DelayedArray/man/DelayedArray-utils.Rd:93: file link 'Math2' in package 'methods' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpEthjJK/R.INSTALL273c28eb57e/DelayedArray/man/DelayedArray-utils.Rd:112: file link 'Summary' in package 'methods' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpEthjJK/R.INSTALL273c28eb57e/DelayedArray/man/DelayedArray-utils.Rd:131: file link 'is.na' in package 'base' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpEthjJK/R.INSTALL273c28eb57e/DelayedArray/man/DelayedArray-utils.Rd:131: file link '!' in package 'base' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpEthjJK/R.INSTALL273c28eb57e/DelayedArray/man/DelayedArray-utils.Rd:133: file link '%*%' in package 'base' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpEthjJK/R.INSTALL273c28eb57e/DelayedArray/man/DelayedArray-utils.Rd:153: file link 'HDF5Array' in package 'HDF5Array' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpEthjJK/R.INSTALL273c28eb57e/DelayedArray/man/DelayedArray-utils.Rd:156: file link 'Ops' in package 'methods' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpEthjJK/R.INSTALL273c28eb57e/DelayedArray/man/DelayedArray-utils.Rd:157: file link 'Math' in package 'methods' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpEthjJK/R.INSTALL273c28eb57e/DelayedArray/man/DelayedArray-utils.Rd:157: file link 'Math2' in package 'methods' does not exist and so has been treated as a topic
    DelayedMatrix-stats                     html  
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpEthjJK/R.INSTALL273c28eb57e/DelayedArray/man/DelayedMatrix-stats.Rd:79: file link 'rowSums' in package 'base' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpEthjJK/R.INSTALL273c28eb57e/DelayedArray/man/DelayedMatrix-stats.Rd:80: file link 'rowMaxs' in package 'matrixStats' does not exist and so has been treated as a topic
    DelayedOp-class                         html  
    RealizationSink-class                   html  
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpEthjJK/R.INSTALL273c28eb57e/DelayedArray/man/RealizationSink-class.Rd:62: file link 'HDF5Array' in package 'HDF5Array' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpEthjJK/R.INSTALL273c28eb57e/DelayedArray/man/RealizationSink-class.Rd:88: file link 'HDF5Array' in package 'HDF5Array' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpEthjJK/R.INSTALL273c28eb57e/DelayedArray/man/RealizationSink-class.Rd:90: file link 'HDF5-dump-management' in package 'HDF5Array' does not exist and so has been treated as a topic
    RleArray-class                          html  
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpEthjJK/R.INSTALL273c28eb57e/DelayedArray/man/RleArray-class.Rd:71: file link 'Rle' in package 'S4Vectors' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpEthjJK/R.INSTALL273c28eb57e/DelayedArray/man/RleArray-class.Rd:94: file link 'Rle' in package 'S4Vectors' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpEthjJK/R.INSTALL273c28eb57e/DelayedArray/man/RleArray-class.Rd:104: file link 'HDF5Array' in package 'HDF5Array' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpEthjJK/R.INSTALL273c28eb57e/DelayedArray/man/RleArray-class.Rd:106: file link 'DataFrame' in package 'S4Vectors' does not exist and so has been treated as a topic
    SparseArraySeed-class                   html  
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpEthjJK/R.INSTALL273c28eb57e/DelayedArray/man/SparseArraySeed-class.Rd:70: file link 'arrayInd' in package 'base' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpEthjJK/R.INSTALL273c28eb57e/DelayedArray/man/SparseArraySeed-class.Rd:120: file link 'arrayInd' in package 'base' does not exist and so has been treated as a topic
    bind-arrays                             html  
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpEthjJK/R.INSTALL273c28eb57e/DelayedArray/man/bind-arrays.Rd:40: file link 'rbind' in package 'base' does not exist and so has been treated as a topic
    blockGrid                               html  
    block_processing                        html  
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpEthjJK/R.INSTALL273c28eb57e/DelayedArray/man/block_processing.Rd:91: file link 'MulticoreParam' in package 'BiocParallel' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpEthjJK/R.INSTALL273c28eb57e/DelayedArray/man/block_processing.Rd:92: file link 'SnowParam' in package 'BiocParallel' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpEthjJK/R.INSTALL273c28eb57e/DelayedArray/man/block_processing.Rd:93: file link 'bpparam' in package 'BiocParallel' does not exist and so has been treated as a topic
    chunkGrid                               html  
    extract_array                           html  
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpEthjJK/R.INSTALL273c28eb57e/DelayedArray/man/extract_array.Rd:38: file link 'DataFrame' in package 'S4Vectors' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpEthjJK/R.INSTALL273c28eb57e/DelayedArray/man/extract_array.Rd:95: file link 'DataFrame' in package 'S4Vectors' does not exist and so has been treated as a topic
    linearInd                               html  
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpEthjJK/R.INSTALL273c28eb57e/DelayedArray/man/linearInd.Rd:9: file link 'arrayInd' in package 'base' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpEthjJK/R.INSTALL273c28eb57e/DelayedArray/man/linearInd.Rd:20: file link 'arrayInd' in package 'base' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpEthjJK/R.INSTALL273c28eb57e/DelayedArray/man/linearInd.Rd:50: file link 'arrayInd' in package 'base' does not exist and so has been treated as a topic
    makeCappedVolumeBox                     html  
    mapToGrid                               html  
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpEthjJK/R.INSTALL273c28eb57e/DelayedArray/man/mapToGrid.Rd:28: file link 'arrayInd' in package 'base' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpEthjJK/R.INSTALL273c28eb57e/DelayedArray/man/mapToGrid.Rd:87: file link 'arrayInd' in package 'base' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpEthjJK/R.INSTALL273c28eb57e/DelayedArray/man/mapToGrid.Rd:97: file link 'arrayInd' in package 'base' does not exist and so has been treated as a topic
    read_block                              html  
    realize                                 html  
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpEthjJK/R.INSTALL273c28eb57e/DelayedArray/man/realize.Rd:52: file link 'HDF5Array' in package 'HDF5Array' does not exist and so has been treated as a topic
    showtree                                html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'DelayedArray' ...
** libs
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/S4Vectors/include"   -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c R_init_DelayedArray.c -o R_init_DelayedArray.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/S4Vectors/include"   -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c S4Vectors_stubs.c -o S4Vectors_stubs.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/S4Vectors/include"   -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c abind.c -o abind.o
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o DelayedArray.dll tmp.def R_init_DelayedArray.o S4Vectors_stubs.o abind.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.8-bioc/meat/DelayedArray.buildbin-libdir/DelayedArray/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'DelayedArray' as DelayedArray_0.8.0.zip
* DONE (DelayedArray)
In R CMD INSTALL
In R CMD INSTALL