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INSTALL report for CNAnorm on tokay1

This page was generated on 2019-04-13 11:21:51 -0400 (Sat, 13 Apr 2019).

Package 286/1649HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
CNAnorm 1.28.0
Stefano Berri
Snapshot Date: 2019-04-12 17:01:30 -0400 (Fri, 12 Apr 2019)
URL: https://git.bioconductor.org/packages/CNAnorm
Branch: RELEASE_3_8
Last Commit: 3650df3
Last Changed Date: 2018-10-30 11:41:48 -0400 (Tue, 30 Oct 2018)
malbec1 Linux (Ubuntu 16.04.6 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
merida1 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: CNAnorm
Version: 1.28.0
Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/CNAnorm_1.28.0.tar.gz && rm -rf CNAnorm.buildbin-libdir && mkdir CNAnorm.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CNAnorm.buildbin-libdir CNAnorm_1.28.0.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL CNAnorm_1.28.0.zip && rm CNAnorm_1.28.0.tar.gz CNAnorm_1.28.0.zip
StartedAt: 2019-04-12 18:26:24 -0400 (Fri, 12 Apr 2019)
EndedAt: 2019-04-12 18:27:09 -0400 (Fri, 12 Apr 2019)
EllapsedTime: 44.4 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/CNAnorm_1.28.0.tar.gz && rm -rf CNAnorm.buildbin-libdir && mkdir CNAnorm.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CNAnorm.buildbin-libdir CNAnorm_1.28.0.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL CNAnorm_1.28.0.zip && rm CNAnorm_1.28.0.tar.gz CNAnorm_1.28.0.zip
###
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install for i386

* installing *source* package 'CNAnorm' ...
** libs
C:/Rtools/mingw_32/bin/gfortran      -O3  -mtune=generic -c daxpy.f -o daxpy.o
C:/Rtools/mingw_32/bin/gfortran      -O3  -mtune=generic -c ddot.f -o ddot.o
C:/Rtools/mingw_32/bin/gfortran      -O3  -mtune=generic -c dgbfa.f -o dgbfa.o
C:/Rtools/mingw_32/bin/gfortran      -O3  -mtune=generic -c dgbsl.f -o dgbsl.o
C:/Rtools/mingw_32/bin/gfortran      -O3  -mtune=generic -c dscal.f -o dscal.o
C:/Rtools/mingw_32/bin/gfortran      -O3  -mtune=generic -c dsmooth.f -o dsmooth.o
C:/Rtools/mingw_32/bin/gfortran      -O3  -mtune=generic -c idamax.f -o idamax.o
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o CNAnorm.dll tmp.def daxpy.o ddot.o dgbfa.o dgbsl.o dscal.o dsmooth.o idamax.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -lgfortran -lm -lquadmath -LC:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.8-bioc/meat/CNAnorm.buildbin-libdir/CNAnorm/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'CNAnorm'
    finding HTML links ... done
    CN                                      html  
    CNAnorm-class                           html  
    DerivData-class                         html  
    InData-class                            html  
    LS041                                   html  
    Params-class                            html  
    addDNACopy-methods                      html  
    addSmooth-methods                       html  
    chrsAndpos-methods                      html  
    data-hg19_hs_ideogr                     html  
    dataFrame2object                        html  
    discreteNorm-methods                    html  
    exportTable-method                      html  
    gPar                                    html  
    gcNorm-methods                          html  
    peakPloidy                              html  
    plotGenome-methods                      html  
    plotPeaks-methods                       html  
    ratio-methods                           html  
    suggValid-methods                       html  
    validation-methods                      html  
    workflowWrapper                         html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'CNAnorm' ...
** libs
C:/Rtools/mingw_64/bin/gfortran      -O2  -mtune=generic -c daxpy.f -o daxpy.o
C:/Rtools/mingw_64/bin/gfortran      -O2  -mtune=generic -c ddot.f -o ddot.o
C:/Rtools/mingw_64/bin/gfortran      -O2  -mtune=generic -c dgbfa.f -o dgbfa.o
C:/Rtools/mingw_64/bin/gfortran      -O2  -mtune=generic -c dgbsl.f -o dgbsl.o
C:/Rtools/mingw_64/bin/gfortran      -O2  -mtune=generic -c dscal.f -o dscal.o
C:/Rtools/mingw_64/bin/gfortran      -O2  -mtune=generic -c dsmooth.f -o dsmooth.o
C:/Rtools/mingw_64/bin/gfortran      -O2  -mtune=generic -c idamax.f -o idamax.o
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o CNAnorm.dll tmp.def daxpy.o ddot.o dgbfa.o dgbsl.o dscal.o dsmooth.o idamax.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -lgfortran -lm -lquadmath -LC:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.8-bioc/meat/CNAnorm.buildbin-libdir/CNAnorm/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'CNAnorm' as CNAnorm_1.28.0.zip
* DONE (CNAnorm)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.8-bioc/R/library'
package 'CNAnorm' successfully unpacked and MD5 sums checked
In R CMD INSTALL