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BUILD BIN report for tofsims on merida1

This page was generated on 2019-04-16 11:59:13 -0400 (Tue, 16 Apr 2019).

Package 1570/1649HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
tofsims 1.10.1
Lorenz Gerber
Snapshot Date: 2019-04-15 17:01:12 -0400 (Mon, 15 Apr 2019)
URL: https://git.bioconductor.org/packages/tofsims
Branch: RELEASE_3_8
Last Commit: 59e42aa
Last Changed Date: 2019-01-04 13:52:26 -0400 (Fri, 04 Jan 2019)
malbec1 Linux (Ubuntu 16.04.6 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
merida1 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK [ OK ]UNNEEDED, same version exists in internal repository

Summary

Package: tofsims
Version: 1.10.1
Command: rm -rf tofsims.buildbin-libdir && mkdir tofsims.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh tofsims_1.10.1.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R tofsims.buildbin-libdir
StartedAt: 2019-04-16 04:51:14 -0400 (Tue, 16 Apr 2019)
EndedAt: 2019-04-16 04:52:01 -0400 (Tue, 16 Apr 2019)
EllapsedTime: 46.9 seconds
RetCode: 0
Status:  OK 
PackageFile: tofsims_1.10.1.tgz
PackageFileSize: 930.1 KiB

Command output

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###
### Running command:
###
###   rm -rf tofsims.buildbin-libdir && mkdir tofsims.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh tofsims_1.10.1.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R tofsims.buildbin-libdir
###
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>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=tofsims.buildbin-libdir tofsims_1.10.1.tar.gz'
>>>>>>> 

* installing *source* package ‘tofsims’ ...
** libs
clang++  -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/RcppArmadillo/include" -I/usr/local/include   -fPIC  -Wall -g -O2  -c LapackEigen.cpp -o LapackEigen.o
clang++  -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/RcppArmadillo/include" -I/usr/local/include   -fPIC  -Wall -g -O2  -c RcppExports.cpp -o RcppExports.o
clang++  -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/RcppArmadillo/include" -I/usr/local/include   -fPIC  -Wall -g -O2  -c c_importer.cpp -o c_importer.o
clang++  -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/RcppArmadillo/include" -I/usr/local/include   -fPIC  -Wall -g -O2  -c nn.cpp -o nn.o
clang++  -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/RcppArmadillo/include" -I/usr/local/include   -fPIC  -Wall -g -O2  -c readRawPhi.cpp -o readRawPhi.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/RcppArmadillo/include" -I/usr/local/include   -fPIC  -Wall -g -O2  -c tofsims_init.c -o tofsims_init.o
clang++  -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/RcppArmadillo/include" -I/usr/local/include   -fPIC  -Wall -g -O2  -c utilities.cpp -o utilities.o
clang++ -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o tofsims.so LapackEigen.o RcppExports.o c_importer.o nn.o readRawPhi.o tofsims_init.o utilities.o -llapack -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.8-bioc/meat/tofsims.buildbin-libdir/tofsims/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (tofsims)


>>>>>>> 
>>>>>>> FIXING LINKS FOR tofsims.buildbin-libdir/tofsims/libs//tofsims.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libgcc_s.1.dylib" "tofsims.buildbin-libdir/tofsims/libs//tofsims.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libgfortran.3.dylib" "tofsims.buildbin-libdir/tofsims/libs//tofsims.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libreadline.5.2.dylib" "tofsims.buildbin-libdir/tofsims/libs//tofsims.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libreadline.dylib" "tofsims.buildbin-libdir/tofsims/libs//tofsims.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libquadmath.0.dylib" "tofsims.buildbin-libdir/tofsims/libs//tofsims.so"