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INSTALL report for snapCGH on merida1

This page was generated on 2019-04-16 11:54:24 -0400 (Tue, 16 Apr 2019).

Package 1471/1649HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
snapCGH 1.52.0
John Marioni
Snapshot Date: 2019-04-15 17:01:12 -0400 (Mon, 15 Apr 2019)
URL: https://git.bioconductor.org/packages/snapCGH
Branch: RELEASE_3_8
Last Commit: 7f9020f
Last Changed Date: 2018-10-30 11:41:42 -0400 (Tue, 30 Oct 2018)
malbec1 Linux (Ubuntu 16.04.6 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
merida1 OS X 10.11.6 El Capitan / x86_64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: snapCGH
Version: 1.52.0
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL snapCGH
StartedAt: 2019-04-15 18:20:59 -0400 (Mon, 15 Apr 2019)
EndedAt: 2019-04-15 18:21:26 -0400 (Mon, 15 Apr 2019)
EllapsedTime: 26.3 seconds
RetCode: 0
Status:  OK 

Command output

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###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL snapCGH
###
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* installing to library ‘/Library/Frameworks/R.framework/Versions/3.5/Resources/library’
* installing *source* package ‘snapCGH’ ...
** libs
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c optimizer.c -o optimizer.o
optimizer.c:26:23: warning: unused variable 'temp2' [-Wunused-variable]
  double denom, temp, temp2, temp3;
                      ^
optimizer.c:26:30: warning: unused variable 'temp3' [-Wunused-variable]
  double denom, temp, temp2, temp3;
                             ^
optimizer.c:26:10: warning: unused variable 'denom' [-Wunused-variable]
  double denom, temp, temp2, temp3;
         ^
optimizer.c:194:69: warning: unused variable 'alphahat' [-Wunused-variable]
  double gammaA[3][3], gammaB[3][3], gammaC[3][3], alpha[3][nrow1], alphahat[3][nrow1], emis_prob[3][nrow1];
                                                                    ^
optimizer.c:195:10: warning: unused variable 'denom' [-Wunused-variable]
  double denom, temp, temp2, temp3;
         ^
optimizer.c:195:23: warning: unused variable 'temp2' [-Wunused-variable]
  double denom, temp, temp2, temp3;
                      ^
optimizer.c:195:30: warning: unused variable 'temp3' [-Wunused-variable]
  double denom, temp, temp2, temp3;
                             ^
optimizer.c:412:69: warning: unused variable 'alphahat' [-Wunused-variable]
  double gammaA[4][4], gammaB[4][4], gammaC[4][4], alpha[4][nrow1], alphahat[4][nrow1], emis_prob[4][nrow1];
                                                                    ^
optimizer.c:413:10: warning: unused variable 'denom' [-Wunused-variable]
  double denom, temp, temp2, temp3;
         ^
optimizer.c:413:23: warning: unused variable 'temp2' [-Wunused-variable]
  double denom, temp, temp2, temp3;
                      ^
optimizer.c:413:30: warning: unused variable 'temp3' [-Wunused-variable]
  double denom, temp, temp2, temp3;
                             ^
optimizer.c:687:30: warning: unused variable 'temp3' [-Wunused-variable]
  double denom, temp, temp2, temp3;
                             ^
optimizer.c:687:23: warning: unused variable 'temp2' [-Wunused-variable]
  double denom, temp, temp2, temp3;
                      ^
optimizer.c:687:10: warning: unused variable 'denom' [-Wunused-variable]
  double denom, temp, temp2, temp3;
         ^
optimizer.c:686:69: warning: unused variable 'alphahat' [-Wunused-variable]
  double gammaA[5][5], gammaB[5][5], gammaC[5][5], alpha[5][nrow1], alphahat[5][nrow1], emis_prob[5][nrow1];
                                                                    ^
15 warnings generated.
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o snapCGH.so optimizer.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Library/Frameworks/R.framework/Versions/3.5/Resources/library/snapCGH/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Note: more than one default provided in switch() call 
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (snapCGH)