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INSTALL report for rqubic on malbec1

This page was generated on 2019-04-16 11:49:16 -0400 (Tue, 16 Apr 2019).

Package 1349/1649HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
rqubic 1.28.0
Jitao David Zhang
Snapshot Date: 2019-04-15 17:01:12 -0400 (Mon, 15 Apr 2019)
URL: https://git.bioconductor.org/packages/rqubic
Branch: RELEASE_3_8
Last Commit: 3f1d19e
Last Changed Date: 2018-10-30 11:41:47 -0400 (Tue, 30 Oct 2018)
malbec1 Linux (Ubuntu 16.04.6 LTS) / x86_64 [ OK ] OK  WARNINGS UNNEEDED, same version exists in internal repository
merida1 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: rqubic
Version: 1.28.0
Command: /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD INSTALL rqubic
StartedAt: 2019-04-15 18:02:09 -0400 (Mon, 15 Apr 2019)
EndedAt: 2019-04-15 18:02:16 -0400 (Mon, 15 Apr 2019)
EllapsedTime: 6.8 seconds
RetCode: 0
Status:  OK 

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD INSTALL rqubic
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* installing to library ‘/home/biocbuild/bbs-3.8-bioc/R/library’
* installing *source* package ‘rqubic’ ...
** libs
gcc -I"/home/biocbuild/bbs-3.8-bioc/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -Wall -c bicluster.c -o bicluster.o
bicluster.c: In function ‘seed_intersect_r’:
bicluster.c:354:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
       if (flag=ss) (*m_cnt)++;
       ^
gcc -I"/home/biocbuild/bbs-3.8-bioc/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -Wall -c discretize.c -o discretize.o
In file included from discretize.c:9:0:
rqubic.h:60:20: warning: ‘EDGELIST_ATT_NAME’ defined but not used [-Wunused-variable]
 static const char *EDGELIST_ATT_NAME="edgelist";
                    ^
rqubic.h:61:20: warning: ‘MINCOL_ATT_NAME’ defined but not used [-Wunused-variable]
 static const char *MINCOL_ATT_NAME="minimumCol";
                    ^
gcc -I"/home/biocbuild/bbs-3.8-bioc/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -Wall -c fib.c -o fib.o
In file included from fib.c:35:0:
rqubic.h:60:20: warning: ‘EDGELIST_ATT_NAME’ defined but not used [-Wunused-variable]
 static const char *EDGELIST_ATT_NAME="edgelist";
                    ^
rqubic.h:61:20: warning: ‘MINCOL_ATT_NAME’ defined but not used [-Wunused-variable]
 static const char *MINCOL_ATT_NAME="minimumCol";
                    ^
gcc -I"/home/biocbuild/bbs-3.8-bioc/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -Wall -c graph.c -o graph.o
gcc -I"/home/biocbuild/bbs-3.8-bioc/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -Wall -c rqubic.c -o rqubic.o
In file included from rqubic.c:5:0:
rqubic.h:60:20: warning: ‘EDGELIST_ATT_NAME’ defined but not used [-Wunused-variable]
 static const char *EDGELIST_ATT_NAME="edgelist";
                    ^
rqubic.h:61:20: warning: ‘MINCOL_ATT_NAME’ defined but not used [-Wunused-variable]
 static const char *MINCOL_ATT_NAME="minimumCol";
                    ^
gcc -shared -L/home/biocbuild/bbs-3.8-bioc/R/lib -L/usr/local/lib -o rqubic.so bicluster.o discretize.o fib.o graph.o rqubic.o -L/home/biocbuild/bbs-3.8-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.8-bioc/R/library/rqubic/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (rqubic)