Package: oposSOM

Version: 2.0.0

Command: rm -rf oposSOM.buildbin-libdir && mkdir oposSOM.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh oposSOM_2.0.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R oposSOM.buildbin-libdir

StartedAt: 2019-04-16 04:29:05 -0400 (Tue, 16 Apr 2019)

EndedAt: 2019-04-16 04:29:50 -0400 (Tue, 16 Apr 2019)

EllapsedTime: 44.1 seconds

RetCode: 0

Status:  OK

PackageFile: oposSOM_2.0.0.tgz

PackageFileSize: 4.077 MiB

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### Running command:
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###   rm -rf oposSOM.buildbin-libdir && mkdir oposSOM.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh oposSOM_2.0.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R oposSOM.buildbin-libdir
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>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=oposSOM.buildbin-libdir oposSOM_2.0.0.tar.gz'
>>>>>>> 

* installing *source* package ‘oposSOM’ ...
** libs
clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/RcppParallel/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/Rcpp/include" -I/usr/local/include   -fPIC  -Wall -g -O2 -c DeltaMatrix.cpp -o DeltaMatrix.o
clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/RcppParallel/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/Rcpp/include" -I/usr/local/include   -fPIC  -Wall -g -O2 -c DistanceCalculator.cpp -o DistanceCalculator.o
clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/RcppParallel/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/Rcpp/include" -I/usr/local/include   -fPIC  -Wall -g -O2 -c NeighborhoodMatrix.cpp -o NeighborhoodMatrix.o
clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/RcppParallel/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/Rcpp/include" -I/usr/local/include   -fPIC  -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o
clang++ -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o oposSOM.so DeltaMatrix.o DistanceCalculator.o NeighborhoodMatrix.o RcppExports.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.8-bioc/meat/oposSOM.buildbin-libdir/oposSOM/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (oposSOM)


>>>>>>> 
>>>>>>> FIXING LINKS FOR oposSOM.buildbin-libdir/oposSOM/libs//oposSOM.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libgcc_s.1.dylib" "oposSOM.buildbin-libdir/oposSOM/libs//oposSOM.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libgfortran.3.dylib" "oposSOM.buildbin-libdir/oposSOM/libs//oposSOM.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libreadline.5.2.dylib" "oposSOM.buildbin-libdir/oposSOM/libs//oposSOM.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libreadline.dylib" "oposSOM.buildbin-libdir/oposSOM/libs//oposSOM.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libquadmath.0.dylib" "oposSOM.buildbin-libdir/oposSOM/libs//oposSOM.so"