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BUILD BIN report for SC3 on merida1

This page was generated on 2019-04-16 11:59:14 -0400 (Tue, 16 Apr 2019).

Package 1388/1649HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
SC3 1.10.1
Vladimir Kiselev
Snapshot Date: 2019-04-15 17:01:12 -0400 (Mon, 15 Apr 2019)
URL: https://git.bioconductor.org/packages/SC3
Branch: RELEASE_3_8
Last Commit: b2e9122
Last Changed Date: 2019-01-04 13:48:15 -0400 (Fri, 04 Jan 2019)
malbec1 Linux (Ubuntu 16.04.6 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
merida1 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK [ OK ]UNNEEDED, same version exists in internal repository

Summary

Package: SC3
Version: 1.10.1
Command: rm -rf SC3.buildbin-libdir && mkdir SC3.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh SC3_1.10.1.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R SC3.buildbin-libdir
StartedAt: 2019-04-16 04:42:37 -0400 (Tue, 16 Apr 2019)
EndedAt: 2019-04-16 04:43:19 -0400 (Tue, 16 Apr 2019)
EllapsedTime: 42.0 seconds
RetCode: 0
Status:  OK 
PackageFile: SC3_1.10.1.tgz
PackageFileSize: 4.892 MiB

Command output

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###
### Running command:
###
###   rm -rf SC3.buildbin-libdir && mkdir SC3.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh SC3_1.10.1.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R SC3.buildbin-libdir
###
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>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=SC3.buildbin-libdir SC3_1.10.1.tar.gz'
>>>>>>> 

* installing *source* package ‘SC3’ ...
** libs
clang++  -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/RcppArmadillo/include" -I/usr/local/include   -fPIC  -Wall -g -O2  -c RcppExports.cpp -o RcppExports.o
clang++  -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/RcppArmadillo/include" -I/usr/local/include   -fPIC  -Wall -g -O2  -c cppFunctions.cpp -o cppFunctions.o
clang++ -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o SC3.so RcppExports.o cppFunctions.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin15/6.1.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.8-bioc/meat/SC3.buildbin-libdir/SC3/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (SC3)


>>>>>>> 
>>>>>>> FIXING LINKS FOR SC3.buildbin-libdir/SC3/libs//SC3.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libgcc_s.1.dylib" "SC3.buildbin-libdir/SC3/libs//SC3.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libgfortran.3.dylib" "SC3.buildbin-libdir/SC3/libs//SC3.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libreadline.5.2.dylib" "SC3.buildbin-libdir/SC3/libs//SC3.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libreadline.dylib" "SC3.buildbin-libdir/SC3/libs//SC3.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libquadmath.0.dylib" "SC3.buildbin-libdir/SC3/libs//SC3.so"
install_name_tool -change "/usr/local/gfortran/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libgfortran.3.dylib" "SC3.buildbin-libdir/SC3/libs//SC3.so"
install_name_tool -change "/usr/local/gfortran/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libquadmath.0.dylib" "SC3.buildbin-libdir/SC3/libs//SC3.so"