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BUILD BIN report for RBioinf on merida1

This page was generated on 2019-04-16 11:54:50 -0400 (Tue, 16 Apr 2019).

Package 1254/1649HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
RBioinf 1.42.0
Robert Gentleman
Snapshot Date: 2019-04-15 17:01:12 -0400 (Mon, 15 Apr 2019)
URL: https://git.bioconductor.org/packages/RBioinf
Branch: RELEASE_3_8
Last Commit: 677ac5e
Last Changed Date: 2018-10-30 11:41:44 -0400 (Tue, 30 Oct 2018)
malbec1 Linux (Ubuntu 16.04.6 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
merida1 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK [ OK ]UNNEEDED, same version exists in internal repository

Summary

Package: RBioinf
Version: 1.42.0
Command: rm -rf RBioinf.buildbin-libdir && mkdir RBioinf.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh RBioinf_1.42.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R RBioinf.buildbin-libdir
StartedAt: 2019-04-16 04:36:17 -0400 (Tue, 16 Apr 2019)
EndedAt: 2019-04-16 04:36:55 -0400 (Tue, 16 Apr 2019)
EllapsedTime: 38.2 seconds
RetCode: 0
Status:  OK 
PackageFile: RBioinf_1.42.0.tgz
PackageFileSize: 3.513 MiB

Command output

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### Running command:
###
###   rm -rf RBioinf.buildbin-libdir && mkdir RBioinf.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh RBioinf_1.42.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R RBioinf.buildbin-libdir
###
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>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=RBioinf.buildbin-libdir RBioinf_1.42.0.tar.gz'
>>>>>>> 

* installing *source* package ‘RBioinf’ ...
** libs
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c Rinit.c -o Rinit.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c rand.c -o rand.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o RBioinf.so Rinit.o rand.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.8-bioc/meat/RBioinf.buildbin-libdir/RBioinf/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (RBioinf)


>>>>>>> 
>>>>>>> FIXING LINKS FOR RBioinf.buildbin-libdir/RBioinf/libs//RBioinf.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libgcc_s.1.dylib" "RBioinf.buildbin-libdir/RBioinf/libs//RBioinf.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libgfortran.3.dylib" "RBioinf.buildbin-libdir/RBioinf/libs//RBioinf.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libreadline.5.2.dylib" "RBioinf.buildbin-libdir/RBioinf/libs//RBioinf.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libreadline.dylib" "RBioinf.buildbin-libdir/RBioinf/libs//RBioinf.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libquadmath.0.dylib" "RBioinf.buildbin-libdir/RBioinf/libs//RBioinf.so"